| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606510
Identifier: 86606510
GI number: 86606510
Start: 1865040
End: 1865843
Strand: Reverse
Name: 86606510
Synonym: CYA_1860
Alternate gene names: NA
Gene position: 1865843-1865040 (Counterclockwise)
Preceding gene: 86606520
Following gene: 86606509
Centisome position: 63.62
GC content: 64.55
Gene sequence:
>804_bases TTGACGCTTGAGCAGGTCAACCTCTCAGCTTCGGCTCTGGCGCTGTTGGACTACTGCCCCCGCTTGTTTTGCTACGTGTA CCTGGAGCGGCTGATTTGGCCGGCAGCGGATGCCTTTGAGCACGAAGCGGAGCAGCAGCGGGGACGCCAGTTTCACCGCC TGGTGGAATCGTACAGCCGCGGGCTCCAGGTGGAGCCGCGCTTGTCGGCCTTGGAGGAGACAGTACGCCAGTGGTGGCAG GTGTTCTTGGCCAGTCCCCATGCCCAGCCGCAGGGGCGGGTGTTGGCGGAACTGCCCCTCTGGCAACGGATTGAGGGGTT TAAGCTGATGGCTCGCCTGGATCGGCTGGTGATTGCGCCGGGATCCCTGCACATTGTCGATTGGAAGACGGAGCGGCAGC GCCCCCCCGACGAACAGTTGGCCCAGGACTGGCAGGTGCGCCTTTACCCGCTGTTGCTCTGCGGGGTGGCCGCTCAACTG CCCCTGGCAGGCCCTTTTGAGCCGGAGCAGGTGCAGCTTACCTTTTGGTATGTGCAGCACCCGCAGCAGCCTTTTCAGTT GCGCTACAGCGCCGCCGCCTACGAGCGGGATCTGGCCCACCTCAAAGCCACCCTAGGCCGCCTGCGGCAACTGGAGGCGC AGGCCTTTCCCGCCCTCCCCTACGGCGAACGCTGTGCCAGTTGCCTGTTTTGCGCCCGTTGCCACGGGCTCATGCCGCCA GGGATCCCTTCCCAGAACCTGACGGACTGGGTTTGGCCGGAAGCGGAGCCACTAGAGGAAACGCCTGAGGCGGAATGGCT ATAG
Upstream 100 bases:
>100_bases GCTCTAGAAGCCATTCTCCAGTCCTAGCGGCACTAGAATGGCCATGAACTCCTCTTCTTGGTCCATGCCTGGGATCCCTG CTGCTTTTTCCCCGCTGAGG
Downstream 100 bases:
>100_bases CCGCCGGGATCTCGGTGACCCCAATCGCTCTCCAAACCTGCATACTGAGTTAGAGAGTATTGCAGGGTTGCTAACTGTGG TGGCAGGAGTCATTGCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MTLEQVNLSASALALLDYCPRLFCYVYLERLIWPAADAFEHEAEQQRGRQFHRLVESYSRGLQVEPRLSALEETVRQWWQ VFLASPHAQPQGRVLAELPLWQRIEGFKLMARLDRLVIAPGSLHIVDWKTERQRPPDEQLAQDWQVRLYPLLLCGVAAQL PLAGPFEPEQVQLTFWYVQHPQQPFQLRYSAAAYERDLAHLKATLGRLRQLEAQAFPALPYGERCASCLFCARCHGLMPP GIPSQNLTDWVWPEAEPLEETPEAEWL
Sequences:
>Translated_267_residues MTLEQVNLSASALALLDYCPRLFCYVYLERLIWPAADAFEHEAEQQRGRQFHRLVESYSRGLQVEPRLSALEETVRQWWQ VFLASPHAQPQGRVLAELPLWQRIEGFKLMARLDRLVIAPGSLHIVDWKTERQRPPDEQLAQDWQVRLYPLLLCGVAAQL PLAGPFEPEQVQLTFWYVQHPQQPFQLRYSAAAYERDLAHLKATLGRLRQLEAQAFPALPYGERCASCLFCARCHGLMPP GIPSQNLTDWVWPEAEPLEETPEAEWL >Mature_266_residues TLEQVNLSASALALLDYCPRLFCYVYLERLIWPAADAFEHEAEQQRGRQFHRLVESYSRGLQVEPRLSALEETVRQWWQV FLASPHAQPQGRVLAELPLWQRIEGFKLMARLDRLVIAPGSLHIVDWKTERQRPPDEQLAQDWQVRLYPLLLCGVAAQLP LAGPFEPEQVQLTFWYVQHPQQPFQLRYSAAAYERDLAHLKATLGRLRQLEAQAFPALPYGERCASCLFCARCHGLMPPG IPSQNLTDWVWPEAEPLEETPEAEWL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30865; Mature: 30733
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLEQVNLSASALALLDYCPRLFCYVYLERLIWPAADAFEHEAEQQRGRQFHRLVESYSR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC GLQVEPRLSALEETVRQWWQVFLASPHAQPQGRVLAELPLWQRIEGFKLMARLDRLVIAP CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHEECC GSLHIVDWKTERQRPPDEQLAQDWQVRLYPLLLCGVAAQLPLAGPFEPEQVQLTFWYVQH CCEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEC PQQPFQLRYSAAAYERDLAHLKATLGRLRQLEAQAFPALPYGERCASCLFCARCHGLMPP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC GIPSQNLTDWVWPEAEPLEETPEAEWL CCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TLEQVNLSASALALLDYCPRLFCYVYLERLIWPAADAFEHEAEQQRGRQFHRLVESYSR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC GLQVEPRLSALEETVRQWWQVFLASPHAQPQGRVLAELPLWQRIEGFKLMARLDRLVIAP CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHEECC GSLHIVDWKTERQRPPDEQLAQDWQVRLYPLLLCGVAAQLPLAGPFEPEQVQLTFWYVQH CCEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEC PQQPFQLRYSAAAYERDLAHLKATLGRLRQLEAQAFPALPYGERCASCLFCARCHGLMPP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC GIPSQNLTDWVWPEAEPLEETPEAEWL CCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA