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The map label for this gene is rimM

Identifier: 86606190

GI number: 86606190

Start: 1537657

End: 1538217

Strand: Reverse

Name: rimM

Synonym: CYA_1525

Alternate gene names: 86606190

Gene position: 1538217-1537657 (Counterclockwise)

Preceding gene: 86606191

Following gene: 86606189

Centisome position: 52.45

GC content: 62.75

Gene sequence:

>561_bases
ATGGTAGCTTCAAGGGATACCGCTTGGCTGCTGGTGGGGCAGGTGGTGGCTGCTCATGGACTGCGGGGCTGGCTGCGGGT
TAAGTGCTGGTCGGATTTTCCGGAGCGCCTTACCGAGCCAGGGCCGCGCTGGCTGCAGCGGGATAGCGATCCGGAGCCTC
TGTTGCATCCTTTGATCGAGGGGCAGTTTTTTCCCGCCAAGGGCCTATACCTGGTGCGGCTGGAAGGAATTCCCGATCGG
ACGGCGGCAGAGGCTTGGGTGGGAGCTAAGGTGTTGGTGCCGGCTTCCCAGCGCCTGCCCCTCGAGCCGGAGGAGTACCA
CTACTCCGATCTCATCGGCCTGGCCGTTTACCATCAAGGGCGGCTGCTGGGGCATGTCTCGGCCATCTGGGCCGCTGGCC
AAGATGTGCTGGAGATCGCCACCCCCGACAAGCGGCAGGTGTTGATCCCCTTTGTGAAGGCTCTGGTGCCGGTTGTGGAT
TTGGAAAAAGGTGAGCTGCAGGTGCAGCCGCCACCGGGATTGGTGGAGAGCTTTCTCGGCCAGGATCGGGCAAGAAACTG
A

Upstream 100 bases:

>100_bases
AACAGGGATCCCGCGCTTCCGGGGCTTCCCAAAAGTTGGGCAGCTCCACGGCTTTCCCGACCGAGGTGAACTTTCCTCAG
CTCGACTAGCAGCGACAGCT

Downstream 100 bases:

>100_bases
TCTCCATCCCTGCATCCCCTGCCAAAGTTTGCCCTCAGAAGCGGCTGTGTGGCCGTTTTAGCCTTTTGTGCTATTATGGG
GGCAGGTTTTTGGCATTTGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MVASRDTAWLLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIEGQFFPAKGLYLVRLEGIPDR
TAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGLAVYHQGRLLGHVSAIWAAGQDVLEIATPDKRQVLIPFVKALVPVVD
LEKGELQVQPPPGLVESFLGQDRARN

Sequences:

>Translated_186_residues
MVASRDTAWLLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIEGQFFPAKGLYLVRLEGIPDR
TAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGLAVYHQGRLLGHVSAIWAAGQDVLEIATPDKRQVLIPFVKALVPVVD
LEKGELQVQPPPGLVESFLGQDRARN
>Mature_186_residues
MVASRDTAWLLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIEGQFFPAKGLYLVRLEGIPDR
TAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGLAVYHQGRLLGHVSAIWAAGQDVLEIATPDKRQVLIPFVKALVPVVD
LEKGELQVQPPPGLVESFLGQDRARN

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SYNJA (Q2JUD0)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_474953.1
- ProteinModelPortal:   Q2JUD0
- SMR:   Q2JUD0
- STRING:   Q2JUD0
- GeneID:   3897131
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_1525
- TIGR:   CYA_1525
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- BioCyc:   SSP321327:CYA_1525-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20702; Mature: 20702

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVASRDTAWLLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIE
CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCHHHCCCCCCCHHHHHHHC
GQFFPAKGLYLVRLEGIPDRTAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGLAVYHQG
CCCCCCCCEEEEEECCCCCCHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
RLLGHVSAIWAAGQDVLEIATPDKRQVLIPFVKALVPVVDLEKGELQVQPPPGLVESFLG
HHHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHC
QDRARN
CCCCCC
>Mature Secondary Structure
MVASRDTAWLLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIE
CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCHHHCCCCCCCHHHHHHHC
GQFFPAKGLYLVRLEGIPDRTAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGLAVYHQG
CCCCCCCCEEEEEECCCCCCHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
RLLGHVSAIWAAGQDVLEIATPDKRQVLIPFVKALVPVVDLEKGELQVQPPPGLVESFLG
HHHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHC
QDRARN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA