| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606153
Identifier: 86606153
GI number: 86606153
Start: 1494061
End: 1495182
Strand: Reverse
Name: 86606153
Synonym: CYA_1486
Alternate gene names: NA
Gene position: 1495182-1494061 (Counterclockwise)
Preceding gene: 86606154
Following gene: 86606152
Centisome position: 50.98
GC content: 66.13
Gene sequence:
>1122_bases ATGGGCTCAGTAGAGGGGGAGAAAGCATTGCAGCATCAGCTCAATCGGCTCAAGCAGTCTAGGCGGTCGCTGCCTCCAGC CGGCACCTGGCTCAGGGCCGCTGGTTTTGCCTTGCTGCTGGGGCTGTTGTCGGCCTGTCAGGGAACCGAGTGGGGAGAGC GGCTGCAAAGAGCGGTGCGACCGGTGGGCCTGCCTCCCCCTCTCTCCGCCGACCGACCGGAGACGCCCACGCCTCTGCCG GGATCCCGCTCCCCCTCTGCTCCTGCCACCCCCCCTGCTTCCTTCACGCCCCCGCCCAGCCAGGTCAGCAGCCGTTTCAC GGATCTGGAGCCCGGATCCCTGGTGGCCCGTGCTGTCTCTGATCTGGATCGGCTGGGTGTCTTTGCCGATATTGTTGGCA GTGAGTTTCAGCCGCAGCGTAGCGTTCGTCGCGGCGAATTTGCCCGCTGGTTGGTGCTGGCCAACAACGTCATTCACGCC GACCAGCCCAGCCGCCAAATCCGTTTGGGATCCGCTGGCGAGCGCCCCTTGTTTTTGGATGTGCCGGAGGAGGATCCCAA CTTTCGCTACATCCAGGCCCTGGGAGCTGCCGGCCTGGTGGTCGGCGATGCCAACCGCGAGTTCCGCCCCAACAGCCTGC TGTCGCGGGCAGAGCTGATCCGCATGAAGGCACCTCTGGATTTGCCGCCCGGCCAGATCAAGGGATCCCGAGCAGAGCTG GAGGAGCGTTGGGGCTTTACCGATGCGGCCCAGATCCCCGACGAGGCCGTTGCCCCCCTGGTGGCGGATCGCAGCCTGGA GAATGCCTCCACGGTGTTGCGCACCTTCGGCCCCATCCGCACGTTTAACCCCTTTGAGCCGGTCAGCCGCGGGGAAGCGG CGATTGCCCTTTCGGCCTTTGGGGAGCGAACGGCTCAGGAAGCTGCCTTGCCAACCCCAACTCCCGCAGCCGAGCCCCCC GACCCTGAGCCTTCTCCTCCTGTTGCCGAGCCAGACCAGACCCCTTCCCCTCCTCCCACCCCTGAGGGCGACCCCTCTCC CAGCGCCACTGGCAACTCTAAACCTCCAGCCGTCACCCCAGGGGCAGGGGAAATTGTGACGCCGCGCGAGCCTCAGCCCT AA
Upstream 100 bases:
>100_bases TAAAAGTGGGGGGTGGGCGCAAAGAATTGCCCCTGGCGGATCTGTTGCCGATGCAAAGCCTGCTGAACTTGTTGGATGTG CTGGAGGAGTTCAGCCGCAA
Downstream 100 bases:
>100_bases ATTGAGGGCGATCCCAGCGTAGAAGCGGAGAGGGCCGCAGCGCTTAACCCCCTCTCCTGCTTCGCCCCCCTGAGGCTGGA TTGCAAAAGGACCAACCCCC
Product: S-layer domain-containing protein
Products: NA
Alternate protein names: S-Layer Region-Like Protein; S-Layer Domain Protein; S-Layer Region-Like; S Layer Domain-Containing Protein
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MGSVEGEKALQHQLNRLKQSRRSLPPAGTWLRAAGFALLLGLLSACQGTEWGERLQRAVRPVGLPPPLSADRPETPTPLP GSRSPSAPATPPASFTPPPSQVSSRFTDLEPGSLVARAVSDLDRLGVFADIVGSEFQPQRSVRRGEFARWLVLANNVIHA DQPSRQIRLGSAGERPLFLDVPEEDPNFRYIQALGAAGLVVGDANREFRPNSLLSRAELIRMKAPLDLPPGQIKGSRAEL EERWGFTDAAQIPDEAVAPLVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAFGERTAQEAALPTPTPAAEPP DPEPSPPVAEPDQTPSPPPTPEGDPSPSATGNSKPPAVTPGAGEIVTPREPQP
Sequences:
>Translated_373_residues MGSVEGEKALQHQLNRLKQSRRSLPPAGTWLRAAGFALLLGLLSACQGTEWGERLQRAVRPVGLPPPLSADRPETPTPLP GSRSPSAPATPPASFTPPPSQVSSRFTDLEPGSLVARAVSDLDRLGVFADIVGSEFQPQRSVRRGEFARWLVLANNVIHA DQPSRQIRLGSAGERPLFLDVPEEDPNFRYIQALGAAGLVVGDANREFRPNSLLSRAELIRMKAPLDLPPGQIKGSRAEL EERWGFTDAAQIPDEAVAPLVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAFGERTAQEAALPTPTPAAEPP DPEPSPPVAEPDQTPSPPPTPEGDPSPSATGNSKPPAVTPGAGEIVTPREPQP >Mature_372_residues GSVEGEKALQHQLNRLKQSRRSLPPAGTWLRAAGFALLLGLLSACQGTEWGERLQRAVRPVGLPPPLSADRPETPTPLPG SRSPSAPATPPASFTPPPSQVSSRFTDLEPGSLVARAVSDLDRLGVFADIVGSEFQPQRSVRRGEFARWLVLANNVIHAD QPSRQIRLGSAGERPLFLDVPEEDPNFRYIQALGAAGLVVGDANREFRPNSLLSRAELIRMKAPLDLPPGQIKGSRAELE ERWGFTDAAQIPDEAVAPLVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAFGERTAQEAALPTPTPAAEPPD PEPSPPVAEPDQTPSPPPTPEGDPSPSATGNSKPPAVTPGAGEIVTPREPQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39686; Mature: 39555
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS01072 SLH_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSVEGEKALQHQLNRLKQSRRSLPPAGTWLRAAGFALLLGLLSACQGTEWGERLQRAVR CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC PVGLPPPLSADRPETPTPLPGSRSPSAPATPPASFTPPPSQVSSRFTDLEPGSLVARAVS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH DLDRLGVFADIVGSEFQPQRSVRRGEFARWLVLANNVIHADQPSRQIRLGSAGERPLFLD HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEECCCCCCCEEEE VPEEDPNFRYIQALGAAGLVVGDANREFRPNSLLSRAELIRMKAPLDLPPGQIKGSRAEL CCCCCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH EERWGFTDAAQIPDEAVAPLVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAF HHHCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHH GERTAQEAALPTPTPAAEPPDPEPSPPVAEPDQTPSPPPTPEGDPSPSATGNSKPPAVTP HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GAGEIVTPREPQP CCCCCCCCCCCCC >Mature Secondary Structure GSVEGEKALQHQLNRLKQSRRSLPPAGTWLRAAGFALLLGLLSACQGTEWGERLQRAVR CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC PVGLPPPLSADRPETPTPLPGSRSPSAPATPPASFTPPPSQVSSRFTDLEPGSLVARAVS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH DLDRLGVFADIVGSEFQPQRSVRRGEFARWLVLANNVIHADQPSRQIRLGSAGERPLFLD HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEECCCCCCCEEEE VPEEDPNFRYIQALGAAGLVVGDANREFRPNSLLSRAELIRMKAPLDLPPGQIKGSRAEL CCCCCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH EERWGFTDAAQIPDEAVAPLVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAF HHHCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHH GERTAQEAALPTPTPAAEPPDPEPSPPVAEPDQTPSPPPTPEGDPSPSATGNSKPPAVTP HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GAGEIVTPREPQP CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA