Click here to switch to the map view.

The map label for this gene is ycf4

Identifier: 86606152

GI number: 86606152

Start: 1493271

End: 1493840

Strand: Reverse

Name: ycf4

Synonym: CYA_1485

Alternate gene names: 86606152

Gene position: 1493840-1493271 (Counterclockwise)

Preceding gene: 86606153

Following gene: 86606147

Centisome position: 50.94

GC content: 61.93

Gene sequence:

>570_bases
GTGTCTGCGACTGTTCCCGAAATTCGCTCGGAAAACCTGCTGCGCTACACCGTAATCGGGTCGCGGCGGCCCAGCGTCTA
CTTTTGGGCGGTGGCGCTGACAGGGGGTGGGCTGGGCTTTACCCTGGCGGGTCTTTCCAGCTATTTCCACCGCAACTTGC
TCCCCTTTTCCGATCCCGCCAGCCTGGTGTTCATTCCCCAGGGCATTGCCATGCTCTTCTACGGCGTGCTCGGATCCCTG
GCGGGGCTGTATCAATGGCTGAGCCTGTACTGGAACCTGGGGGGCGGCTACAACGAGTTCGACCGCCGCACCCAGAAGAT
AACCCTGGTGCGGCAGGGCTTTCCGGGCAAAAACCGCGAGGTGCGCCTAGAATACGACTTTGCCGAGGTGCAAAGCCTGC
GGGTGGAGCTGCGAGAGGGCTTCAACCCTCGCCGCGCCATCTACTTGCGCATAAAAGGACGCGGCGACATCCCCCTCACC
GGCGTCGGCCAGCCCCCTCCCCTGGCCGAGATCGAAAACCAAGCCGCTGAGATCGCCCGCTTTCTCAATGTCAGCCTAGA
AGGTATTTGA

Upstream 100 bases:

>100_bases
GGCGGAAAAATGCTAACTCTCTTGCTGCTCCACAGGGCAAGCTCCTCCCCGCCTATAAAATGGGAGAAGCCAACTTGGAA
AATCGACAGGGATCCCGTCT

Downstream 100 bases:

>100_bases
GATTCTGTTTGGTTGTGGACGGCTGCTGGTCAGGGATCCCAGGAATTGAGATAGCCCAGAAACCGTCTCAACAACATCGG
GTCAATTGTCCCAGTAAATT

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSATVPEIRSENLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYFHRNLLPFSDPASLVFIPQGIAMLFYGVLGSL
AGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNREVRLEYDFAEVQSLRVELREGFNPRRAIYLRIKGRGDIPLT
GVGQPPPLAEIENQAAEIARFLNVSLEGI

Sequences:

>Translated_189_residues
MSATVPEIRSENLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYFHRNLLPFSDPASLVFIPQGIAMLFYGVLGSL
AGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNREVRLEYDFAEVQSLRVELREGFNPRRAIYLRIKGRGDIPLT
GVGQPPPLAEIENQAAEIARFLNVSLEGI
>Mature_188_residues
SATVPEIRSENLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYFHRNLLPFSDPASLVFIPQGIAMLFYGVLGSLA
GLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNREVRLEYDFAEVQSLRVELREGFNPRRAIYLRIKGRGDIPLTG
VGQPPPLAEIENQAAEIARFLNVSLEGI

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF4_SYNJA (Q2JUG5)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_474915.1
- STRING:   Q2JUG5
- GeneID:   3899184
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_1485
- TIGR:   CYA_1485
- eggNOG:   NOG06447
- HOGENOM:   HBG439339
- OMA:   LTRVGQP
- ProtClustDB:   PRK02542
- BioCyc:   SSP321327:CYA_1485-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_00437
- InterPro:   IPR003359
- ProDom:   PD003698

Pfam domain/function: PF02392 Ycf4

EC number: NA

Molecular weight: Translated: 21130; Mature: 20998

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x14d38968)-; HASH(0x12737770)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATVPEIRSENLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYFHRNLLPFSDPA
CCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC
SLVFIPQGIAMLFYGVLGSLAGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNRE
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEECCCCCCCCE
VRLEYDFAEVQSLRVELREGFNPRRAIYLRIKGRGDIPLTGVGQPPPLAEIENQAAEIAR
EEEEECHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
FLNVSLEGI
HHHHHCCCH
>Mature Secondary Structure 
SATVPEIRSENLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYFHRNLLPFSDPA
CCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC
SLVFIPQGIAMLFYGVLGSLAGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNRE
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEEEECCCCCCCCE
VRLEYDFAEVQSLRVELREGFNPRRAIYLRIKGRGDIPLTGVGQPPPLAEIENQAAEIAR
EEEEECHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
FLNVSLEGI
HHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA