| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is yitJ [H]
Identifier: 86605986
GI number: 86605986
Start: 1314340
End: 1315251
Strand: Reverse
Name: yitJ [H]
Synonym: CYA_1304
Alternate gene names: 86605986
Gene position: 1315251-1314340 (Counterclockwise)
Preceding gene: 86605987
Following gene: 86605979
Centisome position: 44.85
GC content: 66.23
Gene sequence:
>912_bases GTGGCCCTGACCTGCCCACCACCGTCGCGCTTTGCCCAAGCCATCCAGCGGGGGGAATTTTTGCTCACGGCTGAGATCAC CCCCCCCAAGGGATCCGACACCAGCACCCTGCTCTCTCTGGCCCAGCAGCTCAAGGGCCGGGTGCATGCCGTCAACATCA CGGACTCCAACCGCGCCATGGCCCGCATGAGCCCCCTGGCCGCCTCGCTGCTGTTGCAGCAGGCGGGCGTTGAACCCATC CTGCAGCTGGCCTGCCGGGATCGCAACCGCCTGGCTCTGCAGGGGGATCTGTTGGGGGCCTCAGCGCTCGGCCTGCGCAA CGTGCTGGCCCTCACCGGGGATCCCATCCAGGTGGGGGATTGCCCCGATGCCCGCCCAGTCTTTGACCTGGAATCGGTGC GTCTGCTGCAGCTTATCCAACGCCTCAACAACGGCCTCGACTGCAACGGCAAGCCCCTCCCCGACGGCGGCACCTGTCTG TTCCCGGGGGCAGCCGTAGAGCCGCAATCCCCCAGCTTTTCCGGCCTGGAGCGGCGCTTCCACCGCAAGCTGGAGAACGG AGCCCAGTTTTTCCAAAGCCAGATGGTGACCGACTTCGAGCAACTGGAGCGCTTCATGGACAAGCTGGGCCGCCCCGCCG GCAAGCCCATCCTGGCGGGCATCTTCCTGCTCAAATCCGCCAAAAACGCCCTCTTCATCAACCGCAACTTGCCGGGGGTG CAGATCCCGGACGCCATTATCCAGCGGCTGGCCGATGCCCCCGATCCCCTCGAAGAAGGGATCCGCATTGCTGCCGAACA GGTGCGCCAGGCCCGCCAGATCTGTCACGGCGTGCACCTGATGGCCGTCAAGGCCGAACACCTCATCCCGCACATCCTGG ACGAGGCCGGGATCCCGCCCCTGAGCAGCTAG
Upstream 100 bases:
>100_bases TCGCCCAAGCCCTGAGAAAAGCGCTTTGGCTGGAAAAACCCTCCCAAAACAGCGGATAATAGGCCAACCCACTGCTTTTT CTTTCGGTCTTCCCAGAATT
Downstream 100 bases:
>100_bases CTCAACACCTGCTCCAAGCCGTAGACCAGCCCCTTGAGCTGCAGCACCTTGCGAATGCCCAGGATCACTCCCGGCATGAA GGCCATCCGATCCGTGATGT
Product: methylenetetrahydrofolate reductase family protein
Products: NA
Alternate protein names: Homocysteine S-methyltransferase; S-methylmethionine:homocysteine methyltransferase; 5,10-methylenetetrahydrofolate reductase [H]
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MALTCPPPSRFAQAIQRGEFLLTAEITPPKGSDTSTLLSLAQQLKGRVHAVNITDSNRAMARMSPLAASLLLQQAGVEPI LQLACRDRNRLALQGDLLGASALGLRNVLALTGDPIQVGDCPDARPVFDLESVRLLQLIQRLNNGLDCNGKPLPDGGTCL FPGAAVEPQSPSFSGLERRFHRKLENGAQFFQSQMVTDFEQLERFMDKLGRPAGKPILAGIFLLKSAKNALFINRNLPGV QIPDAIIQRLADAPDPLEEGIRIAAEQVRQARQICHGVHLMAVKAEHLIPHILDEAGIPPLSS
Sequences:
>Translated_303_residues MALTCPPPSRFAQAIQRGEFLLTAEITPPKGSDTSTLLSLAQQLKGRVHAVNITDSNRAMARMSPLAASLLLQQAGVEPI LQLACRDRNRLALQGDLLGASALGLRNVLALTGDPIQVGDCPDARPVFDLESVRLLQLIQRLNNGLDCNGKPLPDGGTCL FPGAAVEPQSPSFSGLERRFHRKLENGAQFFQSQMVTDFEQLERFMDKLGRPAGKPILAGIFLLKSAKNALFINRNLPGV QIPDAIIQRLADAPDPLEEGIRIAAEQVRQARQICHGVHLMAVKAEHLIPHILDEAGIPPLSS >Mature_302_residues ALTCPPPSRFAQAIQRGEFLLTAEITPPKGSDTSTLLSLAQQLKGRVHAVNITDSNRAMARMSPLAASLLLQQAGVEPIL QLACRDRNRLALQGDLLGASALGLRNVLALTGDPIQVGDCPDARPVFDLESVRLLQLIQRLNNGLDCNGKPLPDGGTCLF PGAAVEPQSPSFSGLERRFHRKLENGAQFFQSQMVTDFEQLERFMDKLGRPAGKPILAGIFLLKSAKNALFINRNLPGVQ IPDAIIQRLADAPDPLEEGIRIAAEQVRQARQICHGVHLMAVKAEHLIPHILDEAGIPPLSS
Specific function: Unknown
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Hcy-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003171 - InterPro: IPR003726 [H]
Pfam domain/function: PF02219 MTHFR; PF02574 S-methyl_trans [H]
EC number: =2.1.1.10; =1.5.1.20 [H]
Molecular weight: Translated: 32794; Mature: 32663
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTCPPPSRFAQAIQRGEFLLTAEITPPKGSDTSTLLSLAQQLKGRVHAVNITDSNRAM CCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHH ARMSPLAASLLLQQAGVEPILQLACRDRNRLALQGDLLGASALGLRNVLALTGDPIQVGD HHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECC CPDARPVFDLESVRLLQLIQRLNNGLDCNGKPLPDGGTCLFPGAAVEPQSPSFSGLERRF CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHH HRKLENGAQFFQSQMVTDFEQLERFMDKLGRPAGKPILAGIFLLKSAKNALFINRNLPGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC QIPDAIIQRLADAPDPLEEGIRIAAEQVRQARQICHGVHLMAVKAEHLIPHILDEAGIPP CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCCC LSS CCC >Mature Secondary Structure ALTCPPPSRFAQAIQRGEFLLTAEITPPKGSDTSTLLSLAQQLKGRVHAVNITDSNRAM CCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHH ARMSPLAASLLLQQAGVEPILQLACRDRNRLALQGDLLGASALGLRNVLALTGDPIQVGD HHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECC CPDARPVFDLESVRLLQLIQRLNNGLDCNGKPLPDGGTCLFPGAAVEPQSPSFSGLERRF CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHH HRKLENGAQFFQSQMVTDFEQLERFMDKLGRPAGKPILAGIFLLKSAKNALFINRNLPGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC QIPDAIIQRLADAPDPLEEGIRIAAEQVRQARQICHGVHLMAVKAEHLIPHILDEAGIPP CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCCC LSS CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353932; 9384377 [H]