Click here to switch to the map view.

The map label for this gene is comF [H]

Identifier: 86605979

GI number: 86605979

Start: 1307640

End: 1308344

Strand: Reverse

Name: comF [H]

Synonym: CYA_1298

Alternate gene names: 86605979

Gene position: 1308344-1307640 (Counterclockwise)

Preceding gene: 86605986

Following gene: 86605976

Centisome position: 44.61

GC content: 64.68

Gene sequence:

>705_bases
ATGGATTGGTGGATTTTGCTCCCTTGTCCGCTCTGCCAGCGCCCGGCTAAGGCTGTGTTTTGTCCAGACTGTCAAAGGCG
GCTGCAGGCGGAGCGGCTCGACTCTTGGCCGGTCACCACTTCGCCTTGGCCGCTTTATGCTTGGGGGATCCACCGGGGAG
CGCTGCGCCGGGCCATCTATTGCCTGAAATATGAAGGACAGCGGCGCATTGGCGCGGTTTTGGGGGAATGGCTGGGATCC
CGCTGGCTGGAGAGCCGACAGAAGCGTTCGGGATCCCAGGGAAGCCATGACCTGCTGTCTCGCCACGACTATACGGTGGT
GCCCATCCCTCTGCATGCGGAGCGGCTGCGGCAGCGGGGCTACAACCAGGCGGCTTTGATCAGCCAAGCTTTTTGCGAGC
GGACGGGTCTAAGACATTTACCTGACGCTCTGGTGCGGGTGCGGGCCACAGCGGCCCAACATGAGCTCAACCCCCTGCAA
CGCCAGCAGAACTTGGCAGGCGCCTTTGCTCTCAAGCGCGCTCCCGCCACGCCGGTGCTACTGGTGGATGACATCTACAC
CACCGGCTCCACCGTCCAAGCGGCGCAGCAGGTCTTGGTCGCTGCCGGGATCCCGGTGGCCGGGGTGATCGTCGTGGCCC
AGGCGCAGCAAGCTGCCGACCGTTCCACCCTGCCCTGGCAGCTCCGACGGCGTGGCCAGGCTTGA

Upstream 100 bases:

>100_bases
GTGGCTTGGCTGAGTGAGAATTTCAGCATCCTTGTTCCCCTCAGCTAGCCTAGAGGAGCTTCTGCACACCAGAAGGAACT
CGCGAAAGGCGATGGGCTGG

Downstream 100 bases:

>100_bases
CTATCGGGCCTGTTGCAGGGCTGCCTGCCGGGGATCCACGTTGAGGAACACGGTGGCATCCCCCTCGACGCGGATGATGC
GCAGAGGGGGCAGCGAGTCC

Product: ComF family protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MDWWILLPCPLCQRPAKAVFCPDCQRRLQAERLDSWPVTTSPWPLYAWGIHRGALRRAIYCLKYEGQRRIGAVLGEWLGS
RWLESRQKRSGSQGSHDLLSRHDYTVVPIPLHAERLRQRGYNQAALISQAFCERTGLRHLPDALVRVRATAAQHELNPLQ
RQQNLAGAFALKRAPATPVLLVDDIYTTGSTVQAAQQVLVAAGIPVAGVIVVAQAQQAADRSTLPWQLRRRGQA

Sequences:

>Translated_234_residues
MDWWILLPCPLCQRPAKAVFCPDCQRRLQAERLDSWPVTTSPWPLYAWGIHRGALRRAIYCLKYEGQRRIGAVLGEWLGS
RWLESRQKRSGSQGSHDLLSRHDYTVVPIPLHAERLRQRGYNQAALISQAFCERTGLRHLPDALVRVRATAAQHELNPLQ
RQQNLAGAFALKRAPATPVLLVDDIYTTGSTVQAAQQVLVAAGIPVAGVIVVAQAQQAADRSTLPWQLRRRGQA
>Mature_234_residues
MDWWILLPCPLCQRPAKAVFCPDCQRRLQAERLDSWPVTTSPWPLYAWGIHRGALRRAIYCLKYEGQRRIGAVLGEWLGS
RWLESRQKRSGSQGSHDLLSRHDYTVVPIPLHAERLRQRGYNQAALISQAFCERTGLRHLPDALVRVRATAAQHELNPLQ
RQQNLAGAFALKRAPATPVLLVDDIYTTGSTVQAAQQVLVAAGIPVAGVIVVAQAQQAADRSTLPWQLRRRGQA

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26235; Mature: 26235

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWWILLPCPLCQRPAKAVFCPDCQRRLQAERLDSWPVTTSPWPLYAWGIHRGALRRAIY
CCEEEEECCHHCCCCCCEEECHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHH
CLKYEGQRRIGAVLGEWLGSRWLESRQKRSGSQGSHDLLSRHDYTVVPIPLHAERLRQRG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCHHHHHHCC
YNQAALISQAFCERTGLRHLPDALVRVRATAAQHELNPLQRQQNLAGAFALKRAPATPVL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEE
LVDDIYTTGSTVQAAQQVLVAAGIPVAGVIVVAQAQQAADRSTLPWQLRRRGQA
EECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MDWWILLPCPLCQRPAKAVFCPDCQRRLQAERLDSWPVTTSPWPLYAWGIHRGALRRAIY
CCEEEEECCHHCCCCCCEEECHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHH
CLKYEGQRRIGAVLGEWLGSRWLESRQKRSGSQGSHDLLSRHDYTVVPIPLHAERLRQRG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCHHHHHHCC
YNQAALISQAFCERTGLRHLPDALVRVRATAAQHELNPLQRQQNLAGAFALKRAPATPVL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEE
LVDDIYTTGSTVQAAQQVLVAAGIPVAGVIVVAQAQQAADRSTLPWQLRRRGQA
EECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]