Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86605987

Identifier: 86605987

GI number: 86605987

Start: 1315337

End: 1316857

Strand: Reverse

Name: 86605987

Synonym: CYA_1306

Alternate gene names: NA

Gene position: 1316857-1315337 (Counterclockwise)

Preceding gene: 86605988

Following gene: 86605986

Centisome position: 44.9

GC content: 66.27

Gene sequence:

>1521_bases
ATGGTTTGGGGATCGCCGCCGCTACAACCCAGTGTTAGGCCCCTGCTCTTGGGGACTCTGCCGCTAATCCTGTCGCTGGT
GTTGCTGGGGGGATGTTCCAGCGACGCCTTCTCCACGGTGCCCCTGGATGGGACGGCTGCCGGCACACGCACAGCCACGC
CCCCCGGGCGAACTTTCTCCGATATTCCGCCCGGCCGGCATCCCCTTCTGAAGCACCTTTGGGCCAGCTTTGTGATCACG
TCTGAGCAGTTGCAATCTGCCCGCAAGGCTCCCATCTCTCTCCATCCGCAGGCTCTCCTTCCCTGCACCGACTGCGAGAG
CTTGGCAGAGCAGCTGGGATCCCTGCTCCCCACCCCCTCCTCCCGCGCCTTGGGCACCTATCGGCCTGACCAGCTCACAC
TCTCTTTCCGAGTTGAGCCCCACAAGACGTTTACCCGCCTCAGCGGCAGCTTTCACCTGGATACCACCACGCCCCTAGTT
CACCCTGGCGAGGGGGTGCGCCTGGTGGTACAGCAGGCCTTCTGGGGGGACAAGGCCCTGGAGCCGCTGCCGCCCCCCCA
GGACTTCTATGCCCGCCAGATGACTCAGGGTCGGTTCGAGGAGCGCACGTGGAGTTTCCCCTTCTCCCTCCCGGAGGCCG
ACGCCCCTGACCCCTCGCCGTCTCTACGGCTGCAGGTTGTCCTCACCTCCCCCATCCCGCCCGATTCTGCCCCTTTTCAG
CGGGGCAGGCCGCTGCCTCCCCCCACGAGCCGGCTGTATCATGGGGTCACTTGGTCGGGCATGCCAACTTGGGAGCAGCT
TCTGGCCTATCGCCAGGCCATTGGCCAGCCCCCCGCCTGGGCAGCGGTGGAGCACCTCTGGGATCCGCGCCAGGACTTTC
CCCAGCCCCTGGCCAATCGCCTGCGGGAGAGCGGCTCCGTTCCCTACCTACGCCTGCGGCTGCAGCCGGCCCACCTCTCT
TCCCTGGCTGCGGGCGAACAGGATGAGACCTTGCGCTCTTGGGCTCGGGGCATCCAGCGCTTTGCCACCCCGATTATCCT
GGCCGTAGCTGTCGGGGACGGGGATACAGAGCTGCAACGACGGGCCTACCGTCACCTGATACAAACCCTGCGCTCTGAGG
CCAATTTGCTCTGGGTTTTAGAGCTGGAGGGAGCGGATAACGAGGCAGCGTCTGCCTGGGCCGCCTTGCCAGGGGTGGAC
TGGCTGAGCCTGGAGGTGAAGGGGGATCCCGAGACCTTTGAAGCGTTGTACCGTCGCCTTGTGGCCTTTAACCCCCAGTT
GCCCCTGATCCTCAGCGGGCCGTCTCCCGACGCAGAAGCTGCCCAGCCCTTTTTGGAAGGCTTGCAAGCCGGGCGGTGGC
TCCAGGTGATTGGCTGGAGCTGGGCCCTGGGCCCGCAGGGGATCCCGCCCGCGGCGGCGACAAACTGGCAGCAGCGTCTG
CACCAGGGGGATCCCCCCCTCTGGCTGGGAGAAATGCGGGTGCAGCCTCCGCCCAGCCCTTCCCCTTCGCCCAAGCCCTG
A

Upstream 100 bases:

>100_bases
AAGTTGTGATCGGGATCAAACCCAAGGTTGGGCTGCTGGGCGAGAATCCCTCTAGCCGTTGCCAAGCGGTCGCGGAGGGG
TGGTGTATTGAGGTGAGTTC

Downstream 100 bases:

>100_bases
GAAAAGCGCTTTGGCTGGAAAAACCCTCCCAAAACAGCGGATAATAGGCCAACCCACTGCTTTTTCTTTCGGTCTTCCCA
GAATTGTGGCCCTGACCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MVWGSPPLQPSVRPLLLGTLPLILSLVLLGGCSSDAFSTVPLDGTAAGTRTATPPGRTFSDIPPGRHPLLKHLWASFVIT
SEQLQSARKAPISLHPQALLPCTDCESLAEQLGSLLPTPSSRALGTYRPDQLTLSFRVEPHKTFTRLSGSFHLDTTTPLV
HPGEGVRLVVQQAFWGDKALEPLPPPQDFYARQMTQGRFEERTWSFPFSLPEADAPDPSPSLRLQVVLTSPIPPDSAPFQ
RGRPLPPPTSRLYHGVTWSGMPTWEQLLAYRQAIGQPPAWAAVEHLWDPRQDFPQPLANRLRESGSVPYLRLRLQPAHLS
SLAAGEQDETLRSWARGIQRFATPIILAVAVGDGDTELQRRAYRHLIQTLRSEANLLWVLELEGADNEAASAWAALPGVD
WLSLEVKGDPETFEALYRRLVAFNPQLPLILSGPSPDAEAAQPFLEGLQAGRWLQVIGWSWALGPQGIPPAAATNWQQRL
HQGDPPLWLGEMRVQPPPSPSPSPKP

Sequences:

>Translated_506_residues
MVWGSPPLQPSVRPLLLGTLPLILSLVLLGGCSSDAFSTVPLDGTAAGTRTATPPGRTFSDIPPGRHPLLKHLWASFVIT
SEQLQSARKAPISLHPQALLPCTDCESLAEQLGSLLPTPSSRALGTYRPDQLTLSFRVEPHKTFTRLSGSFHLDTTTPLV
HPGEGVRLVVQQAFWGDKALEPLPPPQDFYARQMTQGRFEERTWSFPFSLPEADAPDPSPSLRLQVVLTSPIPPDSAPFQ
RGRPLPPPTSRLYHGVTWSGMPTWEQLLAYRQAIGQPPAWAAVEHLWDPRQDFPQPLANRLRESGSVPYLRLRLQPAHLS
SLAAGEQDETLRSWARGIQRFATPIILAVAVGDGDTELQRRAYRHLIQTLRSEANLLWVLELEGADNEAASAWAALPGVD
WLSLEVKGDPETFEALYRRLVAFNPQLPLILSGPSPDAEAAQPFLEGLQAGRWLQVIGWSWALGPQGIPPAAATNWQQRL
HQGDPPLWLGEMRVQPPPSPSPSPKP
>Mature_506_residues
MVWGSPPLQPSVRPLLLGTLPLILSLVLLGGCSSDAFSTVPLDGTAAGTRTATPPGRTFSDIPPGRHPLLKHLWASFVIT
SEQLQSARKAPISLHPQALLPCTDCESLAEQLGSLLPTPSSRALGTYRPDQLTLSFRVEPHKTFTRLSGSFHLDTTTPLV
HPGEGVRLVVQQAFWGDKALEPLPPPQDFYARQMTQGRFEERTWSFPFSLPEADAPDPSPSLRLQVVLTSPIPPDSAPFQ
RGRPLPPPTSRLYHGVTWSGMPTWEQLLAYRQAIGQPPAWAAVEHLWDPRQDFPQPLANRLRESGSVPYLRLRLQPAHLS
SLAAGEQDETLRSWARGIQRFATPIILAVAVGDGDTELQRRAYRHLIQTLRSEANLLWVLELEGADNEAASAWAALPGVD
WLSLEVKGDPETFEALYRRLVAFNPQLPLILSGPSPDAEAAQPFLEGLQAGRWLQVIGWSWALGPQGIPPAAATNWQQRL
HQGDPPLWLGEMRVQPPPSPSPSPKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55573; Mature: 55573

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWGSPPLQPSVRPLLLGTLPLILSLVLLGGCSSDAFSTVPLDGTAAGTRTATPPGRTFS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
DIPPGRHPLLKHLWASFVITSEQLQSARKAPISLHPQALLPCTDCESLAEQLGSLLPTPS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCC
SRALGTYRPDQLTLSFRVEPHKTFTRLSGSFHLDTTTPLVHPGEGVRLVVQQAFWGDKAL
CCCCCCCCCCEEEEEEEECCHHHHHHCCCCEEECCCCCCCCCCCCCEEEEHHHHCCCCCC
EPLPPPQDFYARQMTQGRFEERTWSFPFSLPEADAPDPSPSLRLQVVLTSPIPPDSAPFQ
CCCCCCHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCC
RGRPLPPPTSRLYHGVTWSGMPTWEQLLAYRQAIGQPPAWAAVEHLWDPRQDFPQPLANR
CCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
LRESGSVPYLRLRLQPAHLSSLAAGEQDETLRSWARGIQRFATPIILAVAVGDGDTELQR
HHHCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHH
RAYRHLIQTLRSEANLLWVLELEGADNEAASAWAALPGVDWLSLEVKGDPETFEALYRRL
HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
VAFNPQLPLILSGPSPDAEAAQPFLEGLQAGRWLQVIGWSWALGPQGIPPAAATNWQQRL
HHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECEEECCCCCCCCCHHHHHHHHH
HQGDPPLWLGEMRVQPPPSPSPSPKP
HCCCCCEEECCEECCCCCCCCCCCCC
>Mature Secondary Structure
MVWGSPPLQPSVRPLLLGTLPLILSLVLLGGCSSDAFSTVPLDGTAAGTRTATPPGRTFS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
DIPPGRHPLLKHLWASFVITSEQLQSARKAPISLHPQALLPCTDCESLAEQLGSLLPTPS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCC
SRALGTYRPDQLTLSFRVEPHKTFTRLSGSFHLDTTTPLVHPGEGVRLVVQQAFWGDKAL
CCCCCCCCCCEEEEEEEECCHHHHHHCCCCEEECCCCCCCCCCCCCEEEEHHHHCCCCCC
EPLPPPQDFYARQMTQGRFEERTWSFPFSLPEADAPDPSPSLRLQVVLTSPIPPDSAPFQ
CCCCCCHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCC
RGRPLPPPTSRLYHGVTWSGMPTWEQLLAYRQAIGQPPAWAAVEHLWDPRQDFPQPLANR
CCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
LRESGSVPYLRLRLQPAHLSSLAAGEQDETLRSWARGIQRFATPIILAVAVGDGDTELQR
HHHCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHH
RAYRHLIQTLRSEANLLWVLELEGADNEAASAWAALPGVDWLSLEVKGDPETFEALYRRL
HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
VAFNPQLPLILSGPSPDAEAAQPFLEGLQAGRWLQVIGWSWALGPQGIPPAAATNWQQRL
HHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECEEECCCCCCCCCHHHHHHHHH
HQGDPPLWLGEMRVQPPPSPSPSPKP
HCCCCCEEECCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA