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The map label for this gene is rbfA

Identifier: 86605483

GI number: 86605483

Start: 781898

End: 782347

Strand: Reverse

Name: rbfA

Synonym: CYA_0776

Alternate gene names: 86605483

Gene position: 782347-781898 (Counterclockwise)

Preceding gene: 86605484

Following gene: 86605481

Centisome position: 26.68

GC content: 61.33

Gene sequence:

>450_bases
ATGGCGACAGCGCGACGGGTGGCACGGGTAGCCGAGCTGATCAAACGGGAGGTCAGCCAAATCCTGCTCTCGGAGATCAA
AGATGACCGGGTGGGGGCAGGGATGGTCAGCATTGTGGACGTAGAGGTTTCCAATGACCTGCAAAATGCCCGCATCTTCG
TCAGCATCTATGGCGATGAAGCGGCCCAGCAGCAGACCATGGAGGGGCTGGCTTCCGCCACTCCCTTCGTGCGGCGGGAA
ATCGGTCAGCGCCTCGGCCTGCGACGGGTGCCGACGGTGGTGTTTTTGCAGGATCGCTCTTTGGAGCGGGGATCCCGGGT
TCTGGCCCTGCTCAACCAACTGAGACAGCCCGCTGAGGCCCAACAACAGGAGGGATCCCACCCTGGGGTTGAGGGAAGGA
TGGCGGACACCCCTGGGGGTGAAGAAGACGAATTGAGCGAACAACAATAG

Upstream 100 bases:

>100_bases
TGTTCTGAGGACATGGCGAGGAGAAGCTGGCACCACCTAAGGAGCCGCCGGCAACCGGCCAGAGCAAGTTTGCAGAAGAT
AGGAACCTAAGGACAGAAAA

Downstream 100 bases:

>100_bases
TTGCTCGCTTTAAGAGTTGCCCACTTTCGTGCCAACCTGGGGGATCTGCGCTAAAGCTCCGCCTGCTTTGCACAAGCGAG
AAAAGAACCTACCTGAATGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDEAAQQQTMEGLASATPFVRRE
IGQRLGLRRVPTVVFLQDRSLERGSRVLALLNQLRQPAEAQQQEGSHPGVEGRMADTPGGEEDELSEQQ

Sequences:

>Translated_149_residues
MATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDEAAQQQTMEGLASATPFVRRE
IGQRLGLRRVPTVVFLQDRSLERGSRVLALLNQLRQPAEAQQQEGSHPGVEGRMADTPGGEEDELSEQQ
>Mature_148_residues
ATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDEAAQQQTMEGLASATPFVRREI
GQRLGLRRVPTVVFLQDRSLERGSRVLALLNQLRQPAEAQQQEGSHPGVEGRMADTPGGEEDELSEQQ

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=111, Percent_Identity=36.036036036036, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_SYNJA (Q2JW85)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_474246.1
- ProteinModelPortal:   Q2JW85
- SMR:   Q2JW85
- STRING:   Q2JW85
- GeneID:   3897599
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_0776
- TIGR:   CYA_0776
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   GHAKIFM
- ProtClustDB:   PRK00521
- BioCyc:   SSP321327:CYA_0776-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 16439; Mature: 16308

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCH
AAQQQTMEGLASATPFVRREIGQRLGLRRVPTVVFLQDRSLERGSRVLALLNQLRQPAEA
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHH
QQQEGSHPGVEGRMADTPGGEEDELSEQQ
HHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCH
AAQQQTMEGLASATPFVRREIGQRLGLRRVPTVVFLQDRSLERGSRVLALLNQLRQPAEA
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHH
QQQEGSHPGVEGRMADTPGGEEDELSEQQ
HHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA