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The map label for this gene is ydcM [C]

Identifier: 86605484

GI number: 86605484

Start: 782541

End: 783770

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_0777

Alternate gene names: 86605484

Gene position: 783770-782541 (Counterclockwise)

Preceding gene: 86605488

Following gene: 86605483

Centisome position: 26.72

GC content: 55.45

Gene sequence:

>1230_bases
ATGAGAACCGCTTACCAGTACCGCTTGCGCCCTACTGCTAGCCAAGTCGCCCTGATGGGTGAGTGGCTGGAGCTGCTGCG
TAGGCAGTACAACTATCGCCTGGCAGAACGGTTCAACGGGTGGGAGCAGAATCGCTGCAATATCCATGCCTGCTCCTTGA
CGGTCTGTCATCTGCCTGAGTTGAAAGACAAGCCCGATTTCTACTCACAGAAACGAGACTTGGTAAACACAAAGGCTCTC
TTCCCCGAATACCAAGCGATTCATTCCCAGGTGCTCCAAGACTGCCTACAGCGGGTGCAAAGAGCGTTTGACCGATGGCT
AAAAGGTGACTGTAACGGCAAGCGGGCAGGCAGGCCTAGGTTTAAGGGAGTAGGGCGGTATCGCTCCTTCACCTTCCCCC
AGATGAAGCAGGACTGCATTCGAGGGCAGTTTATCCATCTGCCCAAGATTGGGCCGGTCAAGCTGGTCCAACACCGCCCT
TTGCCGGACGGCTTCGTGATTAAAACTGCTACCGTTGCCCGCAAGGCTGATGGATGGTATGTGACCTTGAGCTTACAAGA
TTCGTCTGTCCCGGAATGGAGCCCTGACCCGCCAACGTGGGAAAACACGATGGGGATAGACCTGGGGCTAAGCTCTTTCT
TGGTCACCGATGAGGGTGAGGTTATCGAGGTTCCTCAGTATTACCGTAAAGCGCAAAAGCCCCTCAAGCGGCTGCAACGG
TCTGTATCGCGCAAGCAGAAGGGGTCAAACCGCTACCAGAAAGCGGTCAAGAGGTTGAGCAAGGCACATCAGAAAGTAGC
CAACCAGCGCCGGGATTTCCACCACAAAGTTGCTCATCAGCTTTTGCAAAAAGGGAGACACATAGCCCATGAGGCATTGA
ACATCAAAGGTCTGGCAAGGACAAGGTTGGCCAAATCTATCCATGACGCCGGTTGGGGTGAGTTCCTGCAAATTCTGGCA
GCCAAGGCTGAAAGAGCTGGGCTGTTGACGATTGCAGGGGATCCCCGCGGCAGCAGTCAAGGGTGCTCGGGGTGCGGTCG
TGAGGTGCCCAAAGAGCTGCATGAGCGGTGGCACGATTGTCCGCACTGTGGGTTGAGGATTGGTAGGGATCACAACTCGG
CGAGGGTCATCAAATCCAGAGCGGTGGGGCGTCCCGTTCTTCAAGCTCAGGAAATGTCCTGCTATCGGGCAGGAGTCACT
GGGAAGCCTGCACTCTATGCGTCAGCATGA

Upstream 100 bases:

>100_bases
AGCCCCCCAGTCCCCCCGTATACGGGGGGATATAGGGGGGGCGGGCCGGTCAGAGTCAGGATGAGAGGCGGGAGCGTTCA
ACAGGTACAATGCATTCATC

Downstream 100 bases:

>100_bases
GTGCGGGAGTACGTCACGTATTCATACTCAAGATAGGGTGGACATGGACCCAGAATAGAGGGGGAAGGAGAAGAGGCGCG
TAGCATCTGCTACTGTTCTG

Product: ISSoc5, transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MRTAYQYRLRPTASQVALMGEWLELLRRQYNYRLAERFNGWEQNRCNIHACSLTVCHLPELKDKPDFYSQKRDLVNTKAL
FPEYQAIHSQVLQDCLQRVQRAFDRWLKGDCNGKRAGRPRFKGVGRYRSFTFPQMKQDCIRGQFIHLPKIGPVKLVQHRP
LPDGFVIKTATVARKADGWYVTLSLQDSSVPEWSPDPPTWENTMGIDLGLSSFLVTDEGEVIEVPQYYRKAQKPLKRLQR
SVSRKQKGSNRYQKAVKRLSKAHQKVANQRRDFHHKVAHQLLQKGRHIAHEALNIKGLARTRLAKSIHDAGWGEFLQILA
AKAERAGLLTIAGDPRGSSQGCSGCGREVPKELHERWHDCPHCGLRIGRDHNSARVIKSRAVGRPVLQAQEMSCYRAGVT
GKPALYASA

Sequences:

>Translated_409_residues
MRTAYQYRLRPTASQVALMGEWLELLRRQYNYRLAERFNGWEQNRCNIHACSLTVCHLPELKDKPDFYSQKRDLVNTKAL
FPEYQAIHSQVLQDCLQRVQRAFDRWLKGDCNGKRAGRPRFKGVGRYRSFTFPQMKQDCIRGQFIHLPKIGPVKLVQHRP
LPDGFVIKTATVARKADGWYVTLSLQDSSVPEWSPDPPTWENTMGIDLGLSSFLVTDEGEVIEVPQYYRKAQKPLKRLQR
SVSRKQKGSNRYQKAVKRLSKAHQKVANQRRDFHHKVAHQLLQKGRHIAHEALNIKGLARTRLAKSIHDAGWGEFLQILA
AKAERAGLLTIAGDPRGSSQGCSGCGREVPKELHERWHDCPHCGLRIGRDHNSARVIKSRAVGRPVLQAQEMSCYRAGVT
GKPALYASA
>Mature_409_residues
MRTAYQYRLRPTASQVALMGEWLELLRRQYNYRLAERFNGWEQNRCNIHACSLTVCHLPELKDKPDFYSQKRDLVNTKAL
FPEYQAIHSQVLQDCLQRVQRAFDRWLKGDCNGKRAGRPRFKGVGRYRSFTFPQMKQDCIRGQFIHLPKIGPVKLVQHRP
LPDGFVIKTATVARKADGWYVTLSLQDSSVPEWSPDPPTWENTMGIDLGLSSFLVTDEGEVIEVPQYYRKAQKPLKRLQR
SVSRKQKGSNRYQKAVKRLSKAHQKVANQRRDFHHKVAHQLLQKGRHIAHEALNIKGLARTRLAKSIHDAGWGEFLQILA
AKAERAGLLTIAGDPRGSSQGCSGCGREVPKELHERWHDCPHCGLRIGRDHNSARVIKSRAVGRPVLQAQEMSCYRAGVT
GKPALYASA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=321, Percent_Identity=31.7757009345794, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46702; Mature: 46702

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS00028 ZINC_FINGER_C2H2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAYQYRLRPTASQVALMGEWLELLRRQYNYRLAERFNGWEQNRCNIHACSLTVCHLPE
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCEEEEEEEEEEECCC
LKDKPDFYSQKRDLVNTKALFPEYQAIHSQVLQDCLQRVQRAFDRWLKGDCNGKRAGRPR
CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
FKGVGRYRSFTFPQMKQDCIRGQFIHLPKIGPVKLVQHRPLPDGFVIKTATVARKADGWY
HHCCCCCCCCCCHHHHHHHHCCCEEECCCCCCHHHHHCCCCCCCEEEEHHHHHCCCCCEE
VTLSLQDSSVPEWSPDPPTWENTMGIDLGLSSFLVTDEGEVIEVPQYYRKAQKPLKRLQR
EEEEECCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCEEECHHHHHHHHHHHHHHHH
SVSRKQKGSNRYQKAVKRLSKAHQKVANQRRDFHHKVAHQLLQKGRHIAHEALNIKGLAR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
TRLAKSIHDAGWGEFLQILAAKAERAGLLTIAGDPRGSSQGCSGCGREVPKELHERWHDC
HHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
PHCGLRIGRDHNSARVIKSRAVGRPVLQAQEMSCYRAGVTGKPALYASA
CCCCCEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRTAYQYRLRPTASQVALMGEWLELLRRQYNYRLAERFNGWEQNRCNIHACSLTVCHLPE
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCEEEEEEEEEEECCC
LKDKPDFYSQKRDLVNTKALFPEYQAIHSQVLQDCLQRVQRAFDRWLKGDCNGKRAGRPR
CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
FKGVGRYRSFTFPQMKQDCIRGQFIHLPKIGPVKLVQHRPLPDGFVIKTATVARKADGWY
HHCCCCCCCCCCHHHHHHHHCCCEEECCCCCCHHHHHCCCCCCCEEEEHHHHHCCCCCEE
VTLSLQDSSVPEWSPDPPTWENTMGIDLGLSSFLVTDEGEVIEVPQYYRKAQKPLKRLQR
EEEEECCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCEEECHHHHHHHHHHHHHHHH
SVSRKQKGSNRYQKAVKRLSKAHQKVANQRRDFHHKVAHQLLQKGRHIAHEALNIKGLAR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
TRLAKSIHDAGWGEFLQILAAKAERAGLLTIAGDPRGSSQGCSGCGREVPKELHERWHDC
HHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
PHCGLRIGRDHNSARVIKSRAVGRPVLQAQEMSCYRAGVTGKPALYASA
CCCCCEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]