Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86605481

Identifier: 86605481

GI number: 86605481

Start: 781029

End: 781538

Strand: Reverse

Name: 86605481

Synonym: CYA_0774

Alternate gene names: NA

Gene position: 781538-781029 (Counterclockwise)

Preceding gene: 86605483

Following gene: 86605480

Centisome position: 26.65

GC content: 55.88

Gene sequence:

>510_bases
ATGGATGTTCAAAGCCCACTGCAACCGGATCCCGCTTTAGCGGGTGCTACTCCACTCCAAGCTCTGCAAGCTCTGAACCA
GAGTGTTGCCGAAGCTTTGGTTTCCTGCTTGAAAGGGCAACCCCAACAAGCCACCCAGCACCTTTTACTGGCTCTGCCGC
AGTTAATGGCTGCTCTGGGGGCTTTGAGGCAAAAATCTTCCGTTGGCGTCAGCGGGCCGGAGGCCTTGGTTGAGTCTACA
GGCCGGGCCTCAGAAGCCAACCCCAAGCGCATCATTCACATCGAAGGCAACCGCGTGCAAGTGTGGGTGGATAACCAGAT
TCGGAGCAGTTGGAGCATTTGGTCGGTGGGAGATCTCAAGGAAGTCTGCCGGCTGGCAGAAGAATTTGATTGTGGCCTCA
GCTATTCCCTGGGAGATAGCTCAGGGTCGAAGTCAGAAATGCTGCTATTGGCCTCCAGTCCTGCGGAACTGCCGGATCTG
CTCTCGAAATCCGAAGACTCTGCTGCCTAG

Upstream 100 bases:

>100_bases
TACGCCAACCGGGGCCTTCTGCCCCAATGGGCAGCACCGTCGCTGCCGTAAACCGGCGAAAGGGCTGTAAAGTTGCGGTT
TGTGCCTTTTCTGCCTTTTC

Downstream 100 bases:

>100_bases
CAGCCCCGTTCTCCGATCGCTGTTTCTCTTGTGACCCCATGCCTATGGCGACACCCCAACGGCTCCAGAAGCTCTTGGCT
CAACAGGGGCTGGCCTCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MDVQSPLQPDPALAGATPLQALQALNQSVAEALVSCLKGQPQQATQHLLLALPQLMAALGALRQKSSVGVSGPEALVEST
GRASEANPKRIIHIEGNRVQVWVDNQIRSSWSIWSVGDLKEVCRLAEEFDCGLSYSLGDSSGSKSEMLLLASSPAELPDL
LSKSEDSAA

Sequences:

>Translated_169_residues
MDVQSPLQPDPALAGATPLQALQALNQSVAEALVSCLKGQPQQATQHLLLALPQLMAALGALRQKSSVGVSGPEALVEST
GRASEANPKRIIHIEGNRVQVWVDNQIRSSWSIWSVGDLKEVCRLAEEFDCGLSYSLGDSSGSKSEMLLLASSPAELPDL
LSKSEDSAA
>Mature_169_residues
MDVQSPLQPDPALAGATPLQALQALNQSVAEALVSCLKGQPQQATQHLLLALPQLMAALGALRQKSSVGVSGPEALVEST
GRASEANPKRIIHIEGNRVQVWVDNQIRSSWSIWSVGDLKEVCRLAEEFDCGLSYSLGDSSGSKSEMLLLASSPAELPDL
LSKSEDSAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17845; Mature: 17845

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVQSPLQPDPALAGATPLQALQALNQSVAEALVSCLKGQPQQATQHLLLALPQLMAALG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ALRQKSSVGVSGPEALVESTGRASEANPKRIIHIEGNRVQVWVDNQIRSSWSIWSVGDLK
HHHHHCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCEEEEEECCHHHCCCCCCCCCCHH
EVCRLAEEFDCGLSYSLGDSSGSKSEMLLLASSPAELPDLLSKSEDSAA
HHHHHHHHHCCCCEECCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MDVQSPLQPDPALAGATPLQALQALNQSVAEALVSCLKGQPQQATQHLLLALPQLMAALG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ALRQKSSVGVSGPEALVESTGRASEANPKRIIHIEGNRVQVWVDNQIRSSWSIWSVGDLK
HHHHHCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCEEEEEECCHHHCCCCCCCCCCHH
EVCRLAEEFDCGLSYSLGDSSGSKSEMLLLASSPAELPDLLSKSEDSAA
HHHHHHHHHCCCCEECCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA