| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605169
Identifier: 86605169
GI number: 86605169
Start: 469759
End: 470304
Strand: Reverse
Name: 86605169
Synonym: CYA_0450
Alternate gene names: NA
Gene position: 470304-469759 (Counterclockwise)
Preceding gene: 86605170
Following gene: 86605165
Centisome position: 16.04
GC content: 61.72
Gene sequence:
>546_bases ATGTCGCCTCCTTTTCTTAAGGGATCCCTGTTTTGGCTGGCCCTGGTGCTGCAGGTGGGCCTGGTTGGGCTGGTGCCAGC TCGGAAGGCGCTTACCCTTGCCACTGGCTCCCCGATCTACTTGCAGATTGCTCCTCTGGATCCCTATGACCCCTTGCGGG GCCGCTACGTAGCTTTGAGCTACACCGTTGCCCAGCTTTCCACCCTAGAGAAACTGCCCGGCTGGTCCCCTGAGCTCGCT AAGCCAGGGATCCTCTACCTGCGCTTGGCCCCTCCTGCCGGGGATCCTGCTCGACCCTGGCAGGCCATTGCCATCAGTCG CGACCGGCCCAGGGAGCTGCGGCCTGGGGAGGTTGTCCTGCAAGGGTGGTTTGATGGGCGGCAGCTTAGGTTTGGGATCG AAGAGTTTTTCATTCCAGAAGCGCTGGGCGATGATCTGGAACCAGAGATCCGCCGCAATCCAGAAACCCTGCGAGCAGAG GTGAAGGTGGATCCCTGGGGCCAGGCAGCGCTGGTGGGCCTTTGGGCGGGAAAACGACGGTACTAA
Upstream 100 bases:
>100_bases GGGCTTATGAGTCCCCTGCTCTACCGCTGAGCTACTGAGCCGGGAAGATGCTTAACTAGGATAGCATCTTTGTGCAGGAA GTTGCTCTCGTCGGCTGGCA
Downstream 100 bases:
>100_bases AGGCCGGCCTTGTTCTGCAGGGGGGGAGGATCCCTTCTAGCCCTCTTTCTTTTTGCGGGAGCGAGTTGCGCTTGTTTTCT TGGCCCTGGCAGATGCTGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSPPFLKGSLFWLALVLQVGLVGLVPARKALTLATGSPIYLQIAPLDPYDPLRGRYVALSYTVAQLSTLEKLPGWSPELA KPGILYLRLAPPAGDPARPWQAIAISRDRPRELRPGEVVLQGWFDGRQLRFGIEEFFIPEALGDDLEPEIRRNPETLRAE VKVDPWGQAALVGLWAGKRRY
Sequences:
>Translated_181_residues MSPPFLKGSLFWLALVLQVGLVGLVPARKALTLATGSPIYLQIAPLDPYDPLRGRYVALSYTVAQLSTLEKLPGWSPELA KPGILYLRLAPPAGDPARPWQAIAISRDRPRELRPGEVVLQGWFDGRQLRFGIEEFFIPEALGDDLEPEIRRNPETLRAE VKVDPWGQAALVGLWAGKRRY >Mature_180_residues SPPFLKGSLFWLALVLQVGLVGLVPARKALTLATGSPIYLQIAPLDPYDPLRGRYVALSYTVAQLSTLEKLPGWSPELAK PGILYLRLAPPAGDPARPWQAIAISRDRPRELRPGEVVLQGWFDGRQLRFGIEEFFIPEALGDDLEPEIRRNPETLRAEV KVDPWGQAALVGLWAGKRRY
Specific function: Unknown
COG id: COG4929
COG function: function code S; Uncharacterized membrane-anchored protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20163; Mature: 20032
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPPFLKGSLFWLALVLQVGLVGLVPARKALTLATGSPIYLQIAPLDPYDPLRGRYVALS CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEEE YTVAQLSTLEKLPGWSPELAKPGILYLRLAPPAGDPARPWQAIAISRDRPRELRPGEVVL EHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEE QGWFDGRQLRFGIEEFFIPEALGDDLEPEIRRNPETLRAEVKVDPWGQAALVGLWAGKRR EECCCCCEEEECHHHHHCCHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEECCCCC Y C >Mature Secondary Structure SPPFLKGSLFWLALVLQVGLVGLVPARKALTLATGSPIYLQIAPLDPYDPLRGRYVALS CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEEE YTVAQLSTLEKLPGWSPELAKPGILYLRLAPPAGDPARPWQAIAISRDRPRELRPGEVVL EHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEE QGWFDGRQLRFGIEEFFIPEALGDDLEPEIRRNPETLRAEVKVDPWGQAALVGLWAGKRR EECCCCCEEEECHHHHHCCHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEECCCCC Y C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA