| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605160
Identifier: 86605160
GI number: 86605160
Start: 461090
End: 461983
Strand: Reverse
Name: 86605160
Synonym: CYA_0441
Alternate gene names: NA
Gene position: 461983-461090 (Counterclockwise)
Preceding gene: 86605161
Following gene: 86605159
Centisome position: 15.75
GC content: 63.87
Gene sequence:
>894_bases ATGGGCAGGGATCCCTGGCGGGCTTATGCCTACCTGGCGGCAGCTATCTTGGGCTGGGCCACGGCGGCCAGCGCCTTTAA GTTTGGCCTGCAACACCTTGCGCCAACGCTTTTGCTAATTTTTTCCGCGTGCAGCTCCTGCCTGATCTTGGGGATGGTTC TGGTGGCTACAGGGCGGGCGCATCTTGTCCGCCAGCAGAAGCGATCCCAGATTGCCTTGTCGGCGCTGCAGGGGCTACTT AACCCGCTTGGCTACTACGGGGTGCTGTTCCAGGCCTATGATCGCCTCTCGGCCCAGGCGGCGCTGGCTTTGAATTACAC CTGGCCGCTGCTGCTGGCTCTCTTGGCGGCGCCGCTGTTGGGGGAGCGCCTGCGCGGGCGGCTGCTGCTGGCTTTGGGCA TGAGCCTAGTGGGGGCGGTGCTGGTGGCCACGGGGGGATCCTGGGACACCTGGCAGGTGGAGGATCCCTGGGGGGTGGGG CTGGCGGTGGGCAGCGCTGCCATTTGGGCCCTCTACTGGCTGCTCAATGTGCGGGATGGACGGGACGCGGTGCTGAAGCT GTTCATGGGGTTTGTCTTCGGCAGCTTCTACTGCCTGCTGCTCTTGCCGTTTCAGGAGCTGAGGTGGACAATGGCGGGGC TGGCCTGGGCAGCCTACATCGGCTTGGCGGAGATGGGGTTGACTTTTGTGTTTTGGCTGCGGGCCCTGGAGCTGGCCCAC GAGCGCGGATCCCTGGCCAATTGGGTCTATGTAACGCCATTCTTGTCGCTGGGGCTGATTGGGGTGCTGTTGCGGGAGCC GATCGCGCCGGGATCGGTGCTGGGCCTGGGACTTATCTTGGCCGGCAACCTCTGGGGATCCCGGCGGGAAAAACCTCAGC CTGTTCTTTCTTAA
Upstream 100 bases:
>100_bases GGCTGGGCTATCTGCTCTACGTTTGGGTGGTGGCGCCGCGGCTGGGCCTTTCCACCGGAGCTAGGCCAAAGGCGGACGAC AGGGATCTGGACCGCTTTTG
Downstream 100 bases:
>100_bases GGCTATGGCGGTGAATCCCATTCCTCTCTATGTAGCGGCAACGGCCCACGGGTTTGGGCACGTCACCCGGCTGGCGGCGG TGGTGAACACTTTGCGGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane Domain-Containing Protein; Transporter Drug/Metabolite Exporter Family; DMT Family Permease; Drug/Metabolite Exporter Family Protein; Drug/Metabolite Transporter Permease; Permease DMT Superfamily; DMT Superfamily Permease; Permease Outative; Drug/Metabolite Transporter Superfamily Permease
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MGRDPWRAYAYLAAAILGWATAASAFKFGLQHLAPTLLLIFSACSSCLILGMVLVATGRAHLVRQQKRSQIALSALQGLL NPLGYYGVLFQAYDRLSAQAALALNYTWPLLLALLAAPLLGERLRGRLLLALGMSLVGAVLVATGGSWDTWQVEDPWGVG LAVGSAAIWALYWLLNVRDGRDAVLKLFMGFVFGSFYCLLLLPFQELRWTMAGLAWAAYIGLAEMGLTFVFWLRALELAH ERGSLANWVYVTPFLSLGLIGVLLREPIAPGSVLGLGLILAGNLWGSRREKPQPVLS
Sequences:
>Translated_297_residues MGRDPWRAYAYLAAAILGWATAASAFKFGLQHLAPTLLLIFSACSSCLILGMVLVATGRAHLVRQQKRSQIALSALQGLL NPLGYYGVLFQAYDRLSAQAALALNYTWPLLLALLAAPLLGERLRGRLLLALGMSLVGAVLVATGGSWDTWQVEDPWGVG LAVGSAAIWALYWLLNVRDGRDAVLKLFMGFVFGSFYCLLLLPFQELRWTMAGLAWAAYIGLAEMGLTFVFWLRALELAH ERGSLANWVYVTPFLSLGLIGVLLREPIAPGSVLGLGLILAGNLWGSRREKPQPVLS >Mature_296_residues GRDPWRAYAYLAAAILGWATAASAFKFGLQHLAPTLLLIFSACSSCLILGMVLVATGRAHLVRQQKRSQIALSALQGLLN PLGYYGVLFQAYDRLSAQAALALNYTWPLLLALLAAPLLGERLRGRLLLALGMSLVGAVLVATGGSWDTWQVEDPWGVGL AVGSAAIWALYWLLNVRDGRDAVLKLFMGFVFGSFYCLLLLPFQELRWTMAGLAWAAYIGLAEMGLTFVFWLRALELAHE RGSLANWVYVTPFLSLGLIGVLLREPIAPGSVLGLGLILAGNLWGSRREKPQPVLS
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32271; Mature: 32139
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRDPWRAYAYLAAAILGWATAASAFKFGLQHLAPTLLLIFSACSSCLILGMVLVATGRA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH HLVRQQKRSQIALSALQGLLNPLGYYGVLFQAYDRLSAQAALALNYTWPLLLALLAAPLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHH GERLRGRLLLALGMSLVGAVLVATGGSWDTWQVEDPWGVGLAVGSAAIWALYWLLNVRDG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCC RDAVLKLFMGFVFGSFYCLLLLPFQELRWTMAGLAWAAYIGLAEMGLTFVFWLRALELAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERGSLANWVYVTPFLSLGLIGVLLREPIAPGSVLGLGLILAGNLWGSRREKPQPVLS HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure GRDPWRAYAYLAAAILGWATAASAFKFGLQHLAPTLLLIFSACSSCLILGMVLVATGRA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH HLVRQQKRSQIALSALQGLLNPLGYYGVLFQAYDRLSAQAALALNYTWPLLLALLAAPLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHH GERLRGRLLLALGMSLVGAVLVATGGSWDTWQVEDPWGVGLAVGSAAIWALYWLLNVRDG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCC RDAVLKLFMGFVFGSFYCLLLLPFQELRWTMAGLAWAAYIGLAEMGLTFVFWLRALELAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERGSLANWVYVTPFLSLGLIGVLLREPIAPGSVLGLGLILAGNLWGSRREKPQPVLS HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA