| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
Click here to switch to the map view.
The map label for this gene is tenA [H]
Identifier: 86605132
GI number: 86605132
Start: 434337
End: 434996
Strand: Reverse
Name: tenA [H]
Synonym: CYA_0413
Alternate gene names: 86605132
Gene position: 434996-434337 (Counterclockwise)
Preceding gene: 86605133
Following gene: 86605127
Centisome position: 14.83
GC content: 59.55
Gene sequence:
>660_bases ATGTCTCAATCTTTTACCGCCCACCTCTGGCAGACGATCGAGCCCATCTACCAACAGATCTTGGATCACCCCTTTAACCA AGAGCTGGCCGCAGGCAGCCTCTCGCGGCAGCGCTTTCAGTTCTATCTGCAGCAGGATGCTCTTTATCTCACCGATTTTG CCCGCGCCCTTGCCTTGATCGGGGCCCGTTCCGAGGGGGCTGAGCGGGTGGTGAGTTTCTTGAACTTTGCCCTGGGGGCC ATTGTGGCCGAGCGCAGCCTGCACGAGAGTTACTTTCGCCTCTACGACATCCAGCCGGAGACAACCTACGCTCCTGCCTG CTTCGCCTACACCCGTTTTCTATTGGCTGCGGCTGCCTTGGATCCCTACGAGGTGGCCATGGCCGCTGTGCTGCCCTGCT TCTGGATTTACCGTGAGGTGGGATCCGCCATTTACCGCACCGCCAAGCCCAACAATCCTTATCAACAATGGATCGACACC TATGCCGGGGAAGAATTTGCCCAGGTGGTGCAACAGGCCCTGGACATCACCGACTCCTTGGCTACGCAGACCACAGCGGC GACGCGGGAGAAGATGACGGCTGCTTTTGTCACCGCCTCTCGCCTGGAATGGCTGTTCTGGGACAGCGCCTACCGCCTGG AAACCTGGCAGCCCGCCTGA
Upstream 100 bases:
>100_bases CGTCCAACTTTCCGGCCACAGGGCACCCAAAGAGTTTCCCCCACACCCAGAGATCTCAATCAGTTGAAAAGAACCCCAGA AACGCCGCGAGAGAGCCACC
Downstream 100 bases:
>100_bases TCCCCGCCGGGCCTGGCGGCTCAGCAAGGTCGTCATGGCCATGGCATGTGGTTATGGTCCAACGCCAAGATGACCCGCAC CTGGGTCAACAGCTCCAGCT
Product: transcriptional activator TenA
Products: NA
Alternate protein names: Thiaminase II; Transcriptional activator tenA [H]
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MSQSFTAHLWQTIEPIYQQILDHPFNQELAAGSLSRQRFQFYLQQDALYLTDFARALALIGARSEGAERVVSFLNFALGA IVAERSLHESYFRLYDIQPETTYAPACFAYTRFLLAAAALDPYEVAMAAVLPCFWIYREVGSAIYRTAKPNNPYQQWIDT YAGEEFAQVVQQALDITDSLATQTTAATREKMTAAFVTASRLEWLFWDSAYRLETWQPA
Sequences:
>Translated_219_residues MSQSFTAHLWQTIEPIYQQILDHPFNQELAAGSLSRQRFQFYLQQDALYLTDFARALALIGARSEGAERVVSFLNFALGA IVAERSLHESYFRLYDIQPETTYAPACFAYTRFLLAAAALDPYEVAMAAVLPCFWIYREVGSAIYRTAKPNNPYQQWIDT YAGEEFAQVVQQALDITDSLATQTTAATREKMTAAFVTASRLEWLFWDSAYRLETWQPA >Mature_218_residues SQSFTAHLWQTIEPIYQQILDHPFNQELAAGSLSRQRFQFYLQQDALYLTDFARALALIGARSEGAERVVSFLNFALGAI VAERSLHESYFRLYDIQPETTYAPACFAYTRFLLAAAALDPYEVAMAAVLPCFWIYREVGSAIYRTAKPNNPYQQWIDTY AGEEFAQVVQQALDITDSLATQTTAATREKMTAAFVTASRLEWLFWDSAYRLETWQPA
Specific function: Stimulates the production of several extracellular degradative enzymes at the transcriptional level, probably by interfering with degS and degU, which are required for this effect. Is not an essential protein, but affects the sporulation frequency [H]
COG id: COG0819
COG function: function code K; Putative transcription activator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiaminase-2 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6324517, Length=210, Percent_Identity=22.3809523809524, Blast_Score=75, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6325378, Length=211, Percent_Identity=26.0663507109005, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6324997, Length=209, Percent_Identity=22.9665071770335, Blast_Score=66, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016084 - InterPro: IPR004305 [H]
Pfam domain/function: PF03070 TENA_THI-4 [H]
EC number: =3.5.99.2 [H]
Molecular weight: Translated: 24973; Mature: 24842
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSFTAHLWQTIEPIYQQILDHPFNQELAAGSLSRQRFQFYLQQDALYLTDFARALALI CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GARSEGAERVVSFLNFALGAIVAERSLHESYFRLYDIQPETTYAPACFAYTRFLLAAAAL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC DPYEVAMAAVLPCFWIYREVGSAIYRTAKPNNPYQQWIDTYAGEEFAQVVQQALDITDSL CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH ATQTTAATREKMTAAFVTASRLEWLFWDSAYRLETWQPA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SQSFTAHLWQTIEPIYQQILDHPFNQELAAGSLSRQRFQFYLQQDALYLTDFARALALI CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GARSEGAERVVSFLNFALGAIVAERSLHESYFRLYDIQPETTYAPACFAYTRFLLAAAAL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC DPYEVAMAAVLPCFWIYREVGSAIYRTAKPNNPYQQWIDTYAGEEFAQVVQQALDITDSL CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH ATQTTAATREKMTAAFVTASRLEWLFWDSAYRLETWQPA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1898926; 9384377 [H]