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The map label for this gene is cpcB-1

Identifier: 86604945

GI number: 86604945

Start: 225749

End: 226267

Strand: Reverse

Name: cpcB-1

Synonym: CYA_0221

Alternate gene names: 86604945

Gene position: 226267-225749 (Counterclockwise)

Preceding gene: 86604947

Following gene: 86604944

Centisome position: 7.72

GC content: 60.89

Gene sequence:

>519_bases
ATGCAAGACGCCTTTACCCGGGTGATCGCTCAGGCAGATGCACGCGGTGCCTTTTTAAGTGATCAAGACTTCGACCGTCT
GGCGGCTTTGGTGGCAGAAGGCAACAAACGCCTGGATGCTGTCAACCGCATGACCAGCAACGCCGCCCAAATCGTAACCA
ACGCGGCTCGTTCCCTGTTTGCCCAGGAGCCGGATCTGATCGCCCCTGGCGGTAATGCCTACACCAACCGTCGCATGGCC
GCCTGCCTGCGGGACATGGAGATCATCTTGCGCTACATCACCTACGCCACCTTGGCGGGGGATAGCTCGGTGCTGGAAGA
TCGCTGCCTCAACGGCCTGCGGGAGACCTACATTGCGCTGGGGGTGCCCACCAGCTCCATGGCCAACGCCATTGCGGCCA
TGAAGAAGGAAGCCCTGGCCAAGATCATGGATCCGAACGGCATCACCCCTGGCGACTGCTCGGCGCTGCAAAGCGAGGTG
GCCAGCTACTTCGACAAGGCGGCTGCCGCCATTGTTTAA

Upstream 100 bases:

>100_bases
GGCAAGGAGGATCCCGCAAACAACAGAGTTTGGGATCCCACTTTTGAGAGGTTCAGCCAGTCGCCCATCGCTTTTTGGAA
AGACCAGAAGGAGATCCATC

Downstream 100 bases:

>100_bases
GTTAAAAGCGGTCGTCCCTCTTTAAAGCTCCGTGAGATCGCCTAGATCCCTTCTTTCCGACAGGCAGACAGGCATTCCCA
ACTTGGAGGAGTGCCGGCTG

Product: phycocyanin, beta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MQDAFTRVIAQADARGAFLSDQDFDRLAALVAEGNKRLDAVNRMTSNAAQIVTNAARSLFAQEPDLIAPGGNAYTNRRMA
ACLRDMEIILRYITYATLAGDSSVLEDRCLNGLRETYIALGVPTSSMANAIAAMKKEALAKIMDPNGITPGDCSALQSEV
ASYFDKAAAAIV

Sequences:

>Translated_172_residues
MQDAFTRVIAQADARGAFLSDQDFDRLAALVAEGNKRLDAVNRMTSNAAQIVTNAARSLFAQEPDLIAPGGNAYTNRRMA
ACLRDMEIILRYITYATLAGDSSVLEDRCLNGLRETYIALGVPTSSMANAIAAMKKEALAKIMDPNGITPGDCSALQSEV
ASYFDKAAAAIV
>Mature_172_residues
MQDAFTRVIAQADARGAFLSDQDFDRLAALVAEGNKRLDAVNRMTSNAAQIVTNAARSLFAQEPDLIAPGGNAYTNRRMA
ACLRDMEIILRYITYATLAGDSSVLEDRCLNGLRETYIALGVPTSSMANAIAAMKKEALAKIMDPNGITPGDCSALQSEV
ASYFDKAAAAIV

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006247 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18369; Mature: 18369

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDAFTRVIAQADARGAFLSDQDFDRLAALVAEGNKRLDAVNRMTSNAAQIVTNAARSLF
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AQEPDLIAPGGNAYTNRRMAACLRDMEIILRYITYATLAGDSSVLEDRCLNGLRETYIAL
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GVPTSSMANAIAAMKKEALAKIMDPNGITPGDCSALQSEVASYFDKAAAAIV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQDAFTRVIAQADARGAFLSDQDFDRLAALVAEGNKRLDAVNRMTSNAAQIVTNAARSLF
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AQEPDLIAPGGNAYTNRRMAACLRDMEIILRYITYATLAGDSSVLEDRCLNGLRETYIAL
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GVPTSSMANAIAAMKKEALAKIMDPNGITPGDCSALQSEVASYFDKAAAAIV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]