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The map label for this gene is cpcA-1

Identifier: 86604944

GI number: 86604944

Start: 225113

End: 225601

Strand: Reverse

Name: cpcA-1

Synonym: CYA_0220

Alternate gene names: 86604944

Gene position: 225601-225113 (Counterclockwise)

Preceding gene: 86604945

Following gene: 86604943

Centisome position: 7.69

GC content: 58.69

Gene sequence:

>489_bases
GTGAAAACTGTCATTACCGAAGCGATTGCCGCTGCTGACAATCAAGGGCGTTTTCTCAATGCCAGCGAGCTGCAGGCCGT
TAATGGTCGTTACCAGCGCGCTGCTGCCTCTCTGGAAGCGGCCCGTGTCTTGACCCAAAACCAACAAACGCTGGTGCGCG
AAGCGGTGCAGGAAGTGTTCAAGCGCTTCCCCTACCTGACCCAGCCGGGCGAAATGGGTCACGGCGATGTGTTTCAGGCC
AAGTGTGCCCGCGACATTGGCTACTACCTGCGCTTTATCACCTACTCGCTGGTTGCAGGCGGCACGGGCCCCCTCGATGA
ATACCTGGTGGCGGGCCTGCGGGAGGTGAACCGCTCCTTTAACCTCTCCCCGAGCTGGTACATTGTAGCTCTGCAGCACA
TGAAGAGCCGTGCTCTGGGCATGCTGAAGGGCCAAGCGGCGAACGAAGCAGCCATTTACTTCGACTACGCCATCAACGCC
CTTAGCTAA

Upstream 100 bases:

>100_bases
CCCTTCTTTCCGACAGGCAGACAGGCATTCCCAACTTGGAGGAGTGCCGGCTGCTCAACTAAGACTTTTGCTAACAGTCA
ACGCATTTAGGAGTTGCAAG

Downstream 100 bases:

>100_bases
GGGATGCCAGAGTAGAGATCCCGTTTTTGGGGGAGCGATCTCTTTCTTCGTCTTCCAATTGAGTGCCCCTACAGAGCAGG
CAGCAGCCCAAGTGGAGCTG

Product: phycocyanin, alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKTVITEAIAAADNQGRFLNASELQAVNGRYQRAAASLEAARVLTQNQQTLVREAVQEVFKRFPYLTQPGEMGHGDVFQA
KCARDIGYYLRFITYSLVAGGTGPLDEYLVAGLREVNRSFNLSPSWYIVALQHMKSRALGMLKGQAANEAAIYFDYAINA
LS

Sequences:

>Translated_162_residues
MKTVITEAIAAADNQGRFLNASELQAVNGRYQRAAASLEAARVLTQNQQTLVREAVQEVFKRFPYLTQPGEMGHGDVFQA
KCARDIGYYLRFITYSLVAGGTGPLDEYLVAGLREVNRSFNLSPSWYIVALQHMKSRALGMLKGQAANEAAIYFDYAINA
LS
>Mature_162_residues
MKTVITEAIAAADNQGRFLNASELQAVNGRYQRAAASLEAARVLTQNQQTLVREAVQEVFKRFPYLTQPGEMGHGDVFQA
KCARDIGYYLRFITYSLVAGGTGPLDEYLVAGLREVNRSFNLSPSWYIVALQHMKSRALGMLKGQAANEAAIYFDYAINA
LS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006246 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17901; Mature: 17901

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVITEAIAAADNQGRFLNASELQAVNGRYQRAAASLEAARVLTQNQQTLVREAVQEVF
CCHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
KRFPYLTQPGEMGHGDVFQAKCARDIGYYLRFITYSLVAGGTGPLDEYLVAGLREVNRSF
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
NLSPSWYIVALQHMKSRALGMLKGQAANEAAIYFDYAINALS
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCC
>Mature Secondary Structure
MKTVITEAIAAADNQGRFLNASELQAVNGRYQRAAASLEAARVLTQNQQTLVREAVQEVF
CCHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
KRFPYLTQPGEMGHGDVFQAKCARDIGYYLRFITYSLVAGGTGPLDEYLVAGLREVNRSF
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
NLSPSWYIVALQHMKSRALGMLKGQAANEAAIYFDYAINALS
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840 [H]