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The map label for this gene is cpcF

Identifier: 86604940

GI number: 86604940

Start: 222992

End: 223708

Strand: Reverse

Name: cpcF

Synonym: CYA_0216

Alternate gene names: 86604940

Gene position: 223708-222992 (Counterclockwise)

Preceding gene: 86604941

Following gene: 86604939

Centisome position: 7.63

GC content: 64.44

Gene sequence:

>717_bases
TTGGGGCTCTCCCCCCCTATTGGCTCGCTTGGATGTTTCGTTAGTTTTTTACTTACCTTGGCCTCTGGGTTGTCTATGTC
CTCTTCCTCGGCTGCGCAAGTGCTTCCCGCTGCTGTGGCTCAACTGGCCGCTGAACTGGAACAGGCCACCTCAGCGGAAG
AACTGTTGCGGGTGGTGAGAGCGCTGGGATCCTTGGGCCACGTGGAAGGGATCCCCCTGCTCATTCGCGCCTTTGGCTTC
AACCGCCCTGCCGTGGGGGAGGCCGCGCTGGAAGAGGTGTTGCGCTTTGGGGAGGCGGCGGTAGGGCCTTTGCTGGCCAA
CATCGATGGCTTCGACTATGGGGCGCGCGCCTATTCGGTGCGGGCGTTGGCCCGTATCGGCCACGGCGATGCCTACCCCT
TTTTGGCGGAAGCCATTGTGGCGGACTTCGCCCCTAGCGTGCGGCGAGCGGCGGCCCGTGGGCTGGGACAGGTAGCGGCA
CGGCGGCCCCTCTCCGATCAAGAGCGAGCCTTGCACCTGTTGCGGCAATGCCTGGGCGACGCCGACTGGGGAGTTCGCTA
TGCCGCCGTCGGATCCCTGACGGATTTGGCTCGGCTGGGAGAGGCGTCCCTGCGATCTGCCGTCGAGGCAGCCCTGCAAA
TGGCCTTGCAGGATGCGGATCCCTTGATTCCCCTACGCGCCCGCCTAAGCCAGCAGGAGCTGGCTGCTGATCCATAA

Upstream 100 bases:

>100_bases
ACTGTTCGACGTGGCGCTGCAGTTAGGGCGAGTGCCGCCGGATCGGGTGGCAGCAGCGATCATCCCGCAACTGGACAGGC
TGTTCTAGACGTGAAAGGGC

Downstream 100 bases:

>100_bases
CCCCTGCCATTTTGTTGTTTCGTTTCCTCAGGAGCATAACCTATGACTCTTCCGCTGCTTGCCGATCGCCCCACCACGCA
AAGCGTGCGGGTGGAGCGCT

Product: phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MGLSPPIGSLGCFVSFLLTLASGLSMSSSSAAQVLPAAVAQLAAELEQATSAEELLRVVRALGSLGHVEGIPLLIRAFGF
NRPAVGEAALEEVLRFGEAAVGPLLANIDGFDYGARAYSVRALARIGHGDAYPFLAEAIVADFAPSVRRAAARGLGQVAA
RRPLSDQERALHLLRQCLGDADWGVRYAAVGSLTDLARLGEASLRSAVEAALQMALQDADPLIPLRARLSQQELAADP

Sequences:

>Translated_238_residues
MGLSPPIGSLGCFVSFLLTLASGLSMSSSSAAQVLPAAVAQLAAELEQATSAEELLRVVRALGSLGHVEGIPLLIRAFGF
NRPAVGEAALEEVLRFGEAAVGPLLANIDGFDYGARAYSVRALARIGHGDAYPFLAEAIVADFAPSVRRAAARGLGQVAA
RRPLSDQERALHLLRQCLGDADWGVRYAAVGSLTDLARLGEASLRSAVEAALQMALQDADPLIPLRARLSQQELAADP
>Mature_237_residues
GLSPPIGSLGCFVSFLLTLASGLSMSSSSAAQVLPAAVAQLAAELEQATSAEELLRVVRALGSLGHVEGIPLLIRAFGFN
RPAVGEAALEEVLRFGEAAVGPLLANIDGFDYGARAYSVRALARIGHGDAYPFLAEAIVADFAPSVRRAAARGLGQVAAR
RPLSDQERALHLLRQCLGDADWGVRYAAVGSLTDLARLGEASLRSAVEAALQMALQDADPLIPLRARLSQQELAADP

Specific function: An enzyme involved in the biosynthesis of bilin. Might be involved in the specific attachment of phycoerythrobilin (PEB) to the R-phycocyanin II alpha chain [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 24822; Mature: 24691

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLSPPIGSLGCFVSFLLTLASGLSMSSSSAAQVLPAAVAQLAAELEQATSAEELLRVVR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ALGSLGHVEGIPLLIRAFGFNRPAVGEAALEEVLRFGEAAVGPLLANIDGFDYGARAYSV
HHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RALARIGHGDAYPFLAEAIVADFAPSVRRAAARGLGQVAARRPLSDQERALHLLRQCLGD
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
ADWGVRYAAVGSLTDLARLGEASLRSAVEAALQMALQDADPLIPLRARLSQQELAADP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GLSPPIGSLGCFVSFLLTLASGLSMSSSSAAQVLPAAVAQLAAELEQATSAEELLRVVR
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ALGSLGHVEGIPLLIRAFGFNRPAVGEAALEEVLRFGEAAVGPLLANIDGFDYGARAYSV
HHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RALARIGHGDAYPFLAEAIVADFAPSVRRAAARGLGQVAARRPLSDQERALHLLRQCLGD
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
ADWGVRYAAVGSLTDLARLGEASLRSAVEAALQMALQDADPLIPLRARLSQQELAADP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8425055 [H]