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The map label for this gene is cpcE-1

Identifier: 86604941

GI number: 86604941

Start: 223721

End: 224473

Strand: Reverse

Name: cpcE-1

Synonym: CYA_0217

Alternate gene names: 86604941

Gene position: 224473-223721 (Counterclockwise)

Preceding gene: 86604942

Following gene: 86604940

Centisome position: 7.65

GC content: 66.27

Gene sequence:

>753_bases
GTGCTGCCCCAGCCGCTCACCTGGGAGCAGGCGATAGCGCGGCTGCAGGGGGATGACCCGCAAGATCGGTACTATGCCGC
TTGGTACTTGGGCACGGTTCGGGATCCGCGGGGGGTAGAGCCACTGCTGTTGGCGTTGCGAGATGAGCGGGATCGCACCG
CCTTGGGGGGCTACCCGCTACGGCGCAATGCGGCCAAAGCCCTTGGGCAAATTGGCGACGTGCGGGCCGTGCCCGGCCTG
ATCGAGGCCCTTGGCTGTAGCGATCTGCATGTGCGGGAAGAGGCTGCCTATGCCCTGGCCCAGTTGGGAGACCGGCGGGC
GGTGGCTCCCTTGCTGGCCTTGCTGCAGTCGCGGGAGCAGGAGCAGCCCTGGGAAGCCTTCATCGAAGCGCTGGGCCAGC
TCAACGCCACCGAGGCCGAGGCGGCGATTCGGCCTTTCTTAAGCCACCCCTCGGAGCGGGTGCGTTCGGCAGCCGCTTGG
GTGCTCTATCGCTTTACACAAGCCGAGGAGCTGACCCAAGTTCTGGTGGCGCTGCTGGCCCACCCCAATTTCAGCCTGCG
CCAGGCGGCCCTTTTCGATCTGGCAGAATCCGGCTGGGTGGCAGGGGCGCCGCTGTTGGCGACAGCCGATGTGGCGCTTA
ACCTGCGCATCAATGCTCTGAAGCGACTGTTCGACGTGGCGCTGCAGTTAGGGCGAGTGCCGCCGGATCGGGTGGCAGCA
GCGATCATCCCGCAACTGGACAGGCTGTTCTAG

Upstream 100 bases:

>100_bases
TGCTGAGTAAGGGATCCCTCTGCTCAACGGCAGTCATCGGCAAGGTGGCCTCGATTCCATGGACGGCTCTGCAAGGGTTC
CCATGACATCCAACACAGCG

Downstream 100 bases:

>100_bases
ACGTGAAAGGGCTTGGGGCTCTCCCCCCCTATTGGCTCGCTTGGATGTTTCGTTAGTTTTTTACTTACCTTGGCCTCTGG
GTTGTCTATGTCCTCTTCCT

Product: phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MLPQPLTWEQAIARLQGDDPQDRYYAAWYLGTVRDPRGVEPLLLALRDERDRTALGGYPLRRNAAKALGQIGDVRAVPGL
IEALGCSDLHVREEAAYALAQLGDRRAVAPLLALLQSREQEQPWEAFIEALGQLNATEAEAAIRPFLSHPSERVRSAAAW
VLYRFTQAEELTQVLVALLAHPNFSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGRVPPDRVAA
AIIPQLDRLF

Sequences:

>Translated_250_residues
MLPQPLTWEQAIARLQGDDPQDRYYAAWYLGTVRDPRGVEPLLLALRDERDRTALGGYPLRRNAAKALGQIGDVRAVPGL
IEALGCSDLHVREEAAYALAQLGDRRAVAPLLALLQSREQEQPWEAFIEALGQLNATEAEAAIRPFLSHPSERVRSAAAW
VLYRFTQAEELTQVLVALLAHPNFSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGRVPPDRVAA
AIIPQLDRLF
>Mature_250_residues
MLPQPLTWEQAIARLQGDDPQDRYYAAWYLGTVRDPRGVEPLLLALRDERDRTALGGYPLRRNAAKALGQIGDVRAVPGL
IEALGCSDLHVREEAAYALAQLGDRRAVAPLLALLQSREQEQPWEAFIEALGQLNATEAEAAIRPFLSHPSERVRSAAAW
VLYRFTQAEELTQVLVALLAHPNFSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGRVPPDRVAA
AIIPQLDRLF

Specific function: An enzyme involved in the biosynthesis of bilin [H]

COG id: COG1413

COG function: function code C; FOG: HEAT repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 27537; Mature: 27537

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPQPLTWEQAIARLQGDDPQDRYYAAWYLGTVRDPRGVEPLLLALRDERDRTALGGYPL
CCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHCCCCCHHCCCCCC
RRNAAKALGQIGDVRAVPGLIEALGCSDLHVREEAAYALAQLGDRRAVAPLLALLQSREQ
HHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
EQPWEAFIEALGQLNATEAEAAIRPFLSHPSERVRSAAAWVLYRFTQAEELTQVLVALLA
CCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HPNFSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGRVPPDRVAA
CCCCHHHHHHHHHHHHCCCCCCCCHHEEHHHHEEHHHHHHHHHHHHHHHHCCCCHHHHHH
AIIPQLDRLF
HHHHHHHHCC
>Mature Secondary Structure
MLPQPLTWEQAIARLQGDDPQDRYYAAWYLGTVRDPRGVEPLLLALRDERDRTALGGYPL
CCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHCCCCCHHCCCCCC
RRNAAKALGQIGDVRAVPGLIEALGCSDLHVREEAAYALAQLGDRRAVAPLLALLQSREQ
HHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
EQPWEAFIEALGQLNATEAEAAIRPFLSHPSERVRSAAAWVLYRFTQAEELTQVLVALLA
CCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HPNFSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGRVPPDRVAA
CCCCHHHHHHHHHHHHCCCCCCCCHHEEHHHHEEHHHHHHHHHHHHHHHHCCCCHHHHHH
AIIPQLDRLF
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1556083; 11759840 [H]