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The map label for this gene is cpcG1

Identifier: 86604939

GI number: 86604939

Start: 222224

End: 222949

Strand: Reverse

Name: cpcG1

Synonym: CYA_0215

Alternate gene names: 86604939

Gene position: 222949-222224 (Counterclockwise)

Preceding gene: 86604940

Following gene: 86604938

Centisome position: 7.6

GC content: 62.67

Gene sequence:

>726_bases
ATGACTCTTCCGCTGCTTGCCGATCGCCCCACCACGCAAAGCGTGCGGGTGGAGCGCTACTTTGTACCCAGCGACGAAAC
CCCGCCCGCCTATCGCCCCGACGACCCGACGGGCATCGAAAATGTCATCCGCGCCGCCTACCGGCAGATCTTCAGCGAAC
ACCTGATGCTGGAGAGCTACCGGCAAAAAGCGCTGGAGTCCCAGCTGCGCAACGGGGCGATCTCGGTGAAGGAGTTTATC
CGTGGCCTGGGCAAGTCGGAGGTGTACCGGGATCTGGTCATGGTTCCTAACGACAACTACCGCTTCGTCGAGATCACCTT
CCAGCGCTTCCTGGGCCGGCCCACCTACAGCCAGCAGGAGCGCATCAAGTACTCCATCATCCTGGCCACCCGCGGTCTGA
ACGGCTTTATCGACGCCGTTGTCGACAGTGAGGAGTACAACGCCGCCTTCGGGGACGATGTGGTGCCTTACCAGCGCCGC
CGCCTTTCCGAGAAGCCGACCAACTTGCTCAACCCCCGCTACGGGGCGCGGTGGCGGGATGTTTCCGGCGTGAAGCGCTC
GACGCGGGAAGTGGTGCGCACCTACCGGATTACTCGGCCTCCCAAGCCCGGGGATCCGGAAAACTTCCTCAACATGGCCC
GCATGCTCAATCCCAAGCCGGCAGCGCGGCAAAACATCAGCGTCTTCGATCTGAAGATCCCCGACATGACCACCAACCGC
CGCTGA

Upstream 100 bases:

>100_bases
TCCCTTGATTCCCCTACGCGCCCGCCTAAGCCAGCAGGAGCTGGCTGCTGATCCATAACCCCTGCCATTTTGTTGTTTCG
TTTCCTCAGGAGCATAACCT

Downstream 100 bases:

>100_bases
GGGTTCGGCCTCCTACCCACTGCGCCCTTGCCAAGCTCTCAAGCCGATCATCCGACGCCGTTCGGGTGGATCGGCTCTTC
GGCTTGGTTGGGGCAAGATT

Product: phycobilisome rod-core linker polypeptide cpcG1

Products: NA

Alternate protein names: L-RC 31.7 [H]

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTLPLLADRPTTQSVRVERYFVPSDETPPAYRPDDPTGIENVIRAAYRQIFSEHLMLESYRQKALESQLRNGAISVKEFI
RGLGKSEVYRDLVMVPNDNYRFVEITFQRFLGRPTYSQQERIKYSIILATRGLNGFIDAVVDSEEYNAAFGDDVVPYQRR
RLSEKPTNLLNPRYGARWRDVSGVKRSTREVVRTYRITRPPKPGDPENFLNMARMLNPKPAARQNISVFDLKIPDMTTNR
R

Sequences:

>Translated_241_residues
MTLPLLADRPTTQSVRVERYFVPSDETPPAYRPDDPTGIENVIRAAYRQIFSEHLMLESYRQKALESQLRNGAISVKEFI
RGLGKSEVYRDLVMVPNDNYRFVEITFQRFLGRPTYSQQERIKYSIILATRGLNGFIDAVVDSEEYNAAFGDDVVPYQRR
RLSEKPTNLLNPRYGARWRDVSGVKRSTREVVRTYRITRPPKPGDPENFLNMARMLNPKPAARQNISVFDLKIPDMTTNR
R
>Mature_240_residues
TLPLLADRPTTQSVRVERYFVPSDETPPAYRPDDPTGIENVIRAAYRQIFSEHLMLESYRQKALESQLRNGAISVKEFIR
GLGKSEVYRDLVMVPNDNYRFVEITFQRFLGRPTYSQQERIKYSIILATRGLNGFIDAVVDSEEYNAAFGDDVVPYQRRR
LSEKPTNLLNPRYGARWRDVSGVKRSTREVVRTYRITRPPKPGDPENFLNMARMLNPKPAARQNISVFDLKIPDMTTNRR

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 27977; Mature: 27846

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPLLADRPTTQSVRVERYFVPSDETPPAYRPDDPTGIENVIRAAYRQIFSEHLMLESY
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RQKALESQLRNGAISVKEFIRGLGKSEVYRDLVMVPNDNYRFVEITFQRFLGRPTYSQQE
HHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHEECCCCCEEEEEEEHHHHHCCCCCCHHH
RIKYSIILATRGLNGFIDAVVDSEEYNAAFGDDVVPYQRRRLSEKPTNLLNPRYGARWRD
HEEEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCC
VSGVKRSTREVVRTYRITRPPKPGDPENFLNMARMLNPKPAARQNISVFDLKIPDMTTNR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHCCCEEEEEECCCCCCCC
R
C
>Mature Secondary Structure 
TLPLLADRPTTQSVRVERYFVPSDETPPAYRPDDPTGIENVIRAAYRQIFSEHLMLESY
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RQKALESQLRNGAISVKEFIRGLGKSEVYRDLVMVPNDNYRFVEITFQRFLGRPTYSQQE
HHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHEECCCCCEEEEEEEHHHHHCCCCCCHHH
RIKYSIILATRGLNGFIDAVVDSEEYNAAFGDDVVPYQRRRLSEKPTNLLNPRYGARWRD
HEEEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCC
VSGVKRSTREVVRTYRITRPPKPGDPENFLNMARMLNPKPAARQNISVFDLKIPDMTTNR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHCCCEEEEEECCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1577010 [H]