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The map label for this gene is ycjO [C]

Identifier: 86360830

GI number: 86360830

Start: 98601

End: 99539

Strand: Direct

Name: ycjO [C]

Synonym: RHE_PF00097

Alternate gene names: 86360830

Gene position: 98601-99539 (Clockwise)

Preceding gene: 86360829

Following gene: 86360831

Centisome position: 15.35

GC content: 59.11

Gene sequence:

>939_bases
ATGGCTTCGGCAGGGATCGAAACGGCCGCCATGGCCAAGGCGTCGAAAGGAAGGAGCAAACCGGATCGGTTTGCTCCCAA
CTACTGGCCCTTCGTCATCCCAGCGCTCATCGTCATATCAGCCGTCATCGTCTTTCCATGGGTGTTTACGGTGTGGATGA
GTGTCAACAGCTGGACGCTCGGCCAGTCGCAGGTCTTTGCGGGGTTGGACAATTATATCAGGCTCACCACTGACATGCGC
TTCTGGGAGTCGCTGTGGCATACGGTGCTTTATACGGCGCTCTCCGTGCTGCTTCCCCTTTTTCTGGGGACGCTCGCCGC
GCTGATCTTCGATGCCCAATTCCCGCTGCGCGGCCTCATACGAGGCATATTCGTGATGCCGATGATGGCGACCCCCGTCG
CCATCGCGCTCGTCTGGACCATGATGTACCATCCGCAGCTCGGCGTGCTCAACTATCTCCTCTCCTTCGTCGGCATCGGC
CCGCAGGAGTGGATCTACAATCAGCACAGCGTCATTCCCTCGCTGGTGCTGGTCGAAAGCTGGCAGTGGACGCCGCTCGT
CATGCTGATCGTGCTCGGCGGCCTGGCGGCGGTTCCGCGCGAACCTTACGAGAGCGCTGAGATCGACGGCGCCAATGTCT
GGCAGAAATTCCGCTATCTAACACTGCCGATGATTGCGCCCTTCCTGATGATCGCCGTGATCATCCGCAGCATCGATGCG
GTGAAGAGCTTCGACATTATTTATGCCATGACCCAGGGCGGCCCCGGCACGGCATCGGAAACGATCAACATCTATCTCTA
CAACACCGCCTTCGCCTACTACGATATCGGCTATGGCTCAGCCATGGCGGTCGTCTTCTTCATCCTCATCGTGCTGCTCT
CGTTCGTCCTGATGATGATCCGGCAGCGCGTGAACTGGTCCGACGGGGAGGCACGCTGA

Upstream 100 bases:

>100_bases
GCGTCGGCCTCACCAACATGATCGGCGGCGCCGATCCTGAAACCGAACTGAAGGCGGCAACGGCGCAGTTCGAACCCGTC
CTGGCGAAAAGCGAGGGATA

Downstream 100 bases:

>100_bases
TGAAGCGCAAGACGCTCGATCGCATCGGACTGCTGTTCGCTGCGCTGGTGATGATCTCGCCGGTCGTCCTGTTCTTCCTC
TGGATGATCTCGCTGTCGCT

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MASAGIETAAMAKASKGRSKPDRFAPNYWPFVIPALIVISAVIVFPWVFTVWMSVNSWTLGQSQVFAGLDNYIRLTTDMR
FWESLWHTVLYTALSVLLPLFLGTLAALIFDAQFPLRGLIRGIFVMPMMATPVAIALVWTMMYHPQLGVLNYLLSFVGIG
PQEWIYNQHSVIPSLVLVESWQWTPLVMLIVLGGLAAVPREPYESAEIDGANVWQKFRYLTLPMIAPFLMIAVIIRSIDA
VKSFDIIYAMTQGGPGTASETINIYLYNTAFAYYDIGYGSAMAVVFFILIVLLSFVLMMIRQRVNWSDGEAR

Sequences:

>Translated_312_residues
MASAGIETAAMAKASKGRSKPDRFAPNYWPFVIPALIVISAVIVFPWVFTVWMSVNSWTLGQSQVFAGLDNYIRLTTDMR
FWESLWHTVLYTALSVLLPLFLGTLAALIFDAQFPLRGLIRGIFVMPMMATPVAIALVWTMMYHPQLGVLNYLLSFVGIG
PQEWIYNQHSVIPSLVLVESWQWTPLVMLIVLGGLAAVPREPYESAEIDGANVWQKFRYLTLPMIAPFLMIAVIIRSIDA
VKSFDIIYAMTQGGPGTASETINIYLYNTAFAYYDIGYGSAMAVVFFILIVLLSFVLMMIRQRVNWSDGEAR
>Mature_311_residues
ASAGIETAAMAKASKGRSKPDRFAPNYWPFVIPALIVISAVIVFPWVFTVWMSVNSWTLGQSQVFAGLDNYIRLTTDMRF
WESLWHTVLYTALSVLLPLFLGTLAALIFDAQFPLRGLIRGIFVMPMMATPVAIALVWTMMYHPQLGVLNYLLSFVGIGP
QEWIYNQHSVIPSLVLVESWQWTPLVMLIVLGGLAAVPREPYESAEIDGANVWQKFRYLTLPMIAPFLMIAVIIRSIDAV
KSFDIIYAMTQGGPGTASETINIYLYNTAFAYYDIGYGSAMAVVFFILIVLLSFVLMMIRQRVNWSDGEAR

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=251, Percent_Identity=34.6613545816733, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1789861, Length=273, Percent_Identity=27.4725274725275, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790465, Length=253, Percent_Identity=27.6679841897233, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35004; Mature: 34873

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCCCCCC
>Mature Secondary Structure 
ASAGIETAAMAKASKGRSKPDRFAPNYWPFVIPALIVISAVIVFPWVFTVWMSVNSWTL
CCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GQSQVFAGLDNYIRLTTDMRFWESLWHTVLYTALSVLLPLFLGTLAALIFDAQFPLRGLI
CHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RGIFVMPMMATPVAIALVWTMMYHPQLGVLNYLLSFVGIGPQEWIYNQHSVIPSLVLVES
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHCC
WQWTPLVMLIVLGGLAAVPREPYESAEIDGANVWQKFRYLTLPMIAPFLMIAVIIRSIDA
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKSFDIIYAMTQGGPGTASETINIYLYNTAFAYYDIGYGSAMAVVFFILIVLLSFVLMMI
HHHHHHEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
RQRVNWSDGEAR
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]