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The map label for this gene is ycjN [C]

Identifier: 86360829

GI number: 86360829

Start: 97273

End: 98601

Strand: Direct

Name: ycjN [C]

Synonym: RHE_PF00096

Alternate gene names: 86360829

Gene position: 97273-98601 (Clockwise)

Preceding gene: 86360828

Following gene: 86360830

Centisome position: 15.14

GC content: 62.98

Gene sequence:

>1329_bases
ATGCCATCATTCTTCAACCCGACGCGGCGCGGCTTTCTGGCCGGCACGGCCGCTCTTGGGGCCAGCAGCGTGCTCGGCAT
GCGGCCGGCAGCGGCTGCGGTCGACTGGAAGCGCTTCGCCGGCACCACGCTCGAAGTCAATCTGGTCAAGAGCCCGCGCA
GCGAAATCCTGACCAAGTATCTGTCCGAGTTCGAGGAGCTCACCGGCATCAAGGTCAATGCCGAAGCAACGCCTGAACAG
CAGCAGCGCCAGAAGACAACCATCGAGCTGAGCTCCGGAAAACCGAGCTTCGACGTTGTGCACCTCAGCTACCACGTCCA
GAAGCGGCAGTTCGAGAAAGGCGGCTGGCTTGCCGACATCAGCGGCTTTCTCAAGGACGCCTCGCTGACTGACCCCTCCT
TGGTGGAAAGCGATTTCGCCGAAGCAGGTCTCGCCTTCGCCAAGGATGCCGATGGCGTTCTGCGTTCGCTGCCTTTCTCG
GTCGATTACTGGATCATCTACTGGAACAAGGCGTTGTTCGAGAAGAAGGGGCTTGCCTACCCCACGAGCTTCGAAGAACT
GGCAAGCGCCGCAGAAGCGTTGACCGATCCCTCGACCAACACCTATGGCTTCGTCGCCCGCGGCCTGAAGAACGCCAACA
CGCCGGTCTGGACGACGTTGCTGCTTGGCTATGGCTCAAGCCCGCTCGGCCCGGACGGCAAGCTGCGCACGACATCGCAG
GAAGCGATCGACGCGGCCAAGCTTTATCAGAGGCTGATGACCAAGACCGCTCCTCCCGGCGTTTCCGGTTTCAACTGGGC
CGAGGCGCAGTCGGCCTTCCTGCAGGGCAAGATCGGCATGTGGCTGGATGGTGTCGGTTTCGCCCCGCCGATCGAAAATC
CGGAAAAGTCGCGCGTCGTCGGCCAGGTCGGTTACGGCGTCATGCCGAAAGGACCGAAGGCGCAGGCCGCCGGCACCTTC
GGCGACGGCCTTGGTGTCGTCGCGGCAAGCCAGAAGAAGGAAGCCGCCTACCTGTTTTGCCAATGGGCGATTTCGCACGA
CATGGGCGCGCGCCTGCTGCAAGCCGGCGCCGGCGTTCCGTTCCGCCAGTCCGTGCTCGAGGATGCGAAGGTCCGCGAAG
GCGTAAAGATGCCCGGCACATGGCTGGATGCCGTTGCCGGCTCCGGCAAGATTTCGCAGCTCGCCCTGCCGGTCATCATT
CCGGTCACCGAGTTCCGCGACATCTATGGCGTCGGCCTCACCAACATGATCGGCGGCGCCGATCCTGAAACCGAACTGAA
GGCGGCAACGGCGCAGTTCGAACCCGTCCTGGCGAAAAGCGAGGGATAA

Upstream 100 bases:

>100_bases
TGTCGCACACATCAATCATGCAAGGGATCGTGCGCTCGGGATATAATCGAGAATGAACAGCCGGAGATGAGGAGATCGCC
GGCAAAAGGAGGAGGATTAC

Downstream 100 bases:

>100_bases
TGGCTTCGGCAGGGATCGAAACGGCCGCCATGGCCAAGGCGTCGAAAGGAAGGAGCAAACCGGATCGGTTTGCTCCCAAC
TACTGGCCCTTCGTCATCCC

Product: sugar ABC transporter, substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MPSFFNPTRRGFLAGTAALGASSVLGMRPAAAAVDWKRFAGTTLEVNLVKSPRSEILTKYLSEFEELTGIKVNAEATPEQ
QQRQKTTIELSSGKPSFDVVHLSYHVQKRQFEKGGWLADISGFLKDASLTDPSLVESDFAEAGLAFAKDADGVLRSLPFS
VDYWIIYWNKALFEKKGLAYPTSFEELASAAEALTDPSTNTYGFVARGLKNANTPVWTTLLLGYGSSPLGPDGKLRTTSQ
EAIDAAKLYQRLMTKTAPPGVSGFNWAEAQSAFLQGKIGMWLDGVGFAPPIENPEKSRVVGQVGYGVMPKGPKAQAAGTF
GDGLGVVAASQKKEAAYLFCQWAISHDMGARLLQAGAGVPFRQSVLEDAKVREGVKMPGTWLDAVAGSGKISQLALPVII
PVTEFRDIYGVGLTNMIGGADPETELKAATAQFEPVLAKSEG

Sequences:

>Translated_442_residues
MPSFFNPTRRGFLAGTAALGASSVLGMRPAAAAVDWKRFAGTTLEVNLVKSPRSEILTKYLSEFEELTGIKVNAEATPEQ
QQRQKTTIELSSGKPSFDVVHLSYHVQKRQFEKGGWLADISGFLKDASLTDPSLVESDFAEAGLAFAKDADGVLRSLPFS
VDYWIIYWNKALFEKKGLAYPTSFEELASAAEALTDPSTNTYGFVARGLKNANTPVWTTLLLGYGSSPLGPDGKLRTTSQ
EAIDAAKLYQRLMTKTAPPGVSGFNWAEAQSAFLQGKIGMWLDGVGFAPPIENPEKSRVVGQVGYGVMPKGPKAQAAGTF
GDGLGVVAASQKKEAAYLFCQWAISHDMGARLLQAGAGVPFRQSVLEDAKVREGVKMPGTWLDAVAGSGKISQLALPVII
PVTEFRDIYGVGLTNMIGGADPETELKAATAQFEPVLAKSEG
>Mature_441_residues
PSFFNPTRRGFLAGTAALGASSVLGMRPAAAAVDWKRFAGTTLEVNLVKSPRSEILTKYLSEFEELTGIKVNAEATPEQQ
QRQKTTIELSSGKPSFDVVHLSYHVQKRQFEKGGWLADISGFLKDASLTDPSLVESDFAEAGLAFAKDADGVLRSLPFSV
DYWIIYWNKALFEKKGLAYPTSFEELASAAEALTDPSTNTYGFVARGLKNANTPVWTTLLLGYGSSPLGPDGKLRTTSQE
AIDAAKLYQRLMTKTAPPGVSGFNWAEAQSAFLQGKIGMWLDGVGFAPPIENPEKSRVVGQVGYGVMPKGPKAQAAGTFG
DGLGVVAASQKKEAAYLFCQWAISHDMGARLLQAGAGVPFRQSVLEDAKVREGVKMPGTWLDAVAGSGKISQLALPVIIP
VTEFRDIYGVGLTNMIGGADPETELKAATAQFEPVLAKSEG

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47283; Mature: 47152

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSFFNPTRRGFLAGTAALGASSVLGMRPAAAAVDWKRFAGTTLEVNLVKSPRSEILTKY
CCCCCCCHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHH
LSEFEELTGIKVNAEATPEQQQRQKTTIELSSGKPSFDVVHLSYHVQKRQFEKGGWLADI
HHHHHHHCCEEEECCCCCHHHHHHCCEEEECCCCCCEEEEEEEEHHHHHHHHCCCCCHHH
SGFLKDASLTDPSLVESDFAEAGLAFAKDADGVLRSLPFSVDYWIIYWNKALFEKKGLAY
HHHHHCCCCCCCHHHHHHHHHHCCHHHCCHHHHHHHCCCCEEEEEEEECHHHHHHCCCCC
PTSFEELASAAEALTDPSTNTYGFVARGLKNANTPVWTTLLLGYGSSPLGPDGKLRTTSQ
CCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEECCHH
EAIDAAKLYQRLMTKTAPPGVSGFNWAEAQSAFLQGKIGMWLDGVGFAPPIENPEKSRVV
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHH
GQVGYGVMPKGPKAQAAGTFGDGLGVVAASQKKEAAYLFCQWAISHDMGARLLQAGAGVP
HHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHCCCCC
FRQSVLEDAKVREGVKMPGTWLDAVAGSGKISQLALPVIIPVTEFRDIYGVGLTNMIGGA
HHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHEECEEEEEHHHHHHHHHCCHHHHHCCC
DPETELKAATAQFEPVLAKSEG
CCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PSFFNPTRRGFLAGTAALGASSVLGMRPAAAAVDWKRFAGTTLEVNLVKSPRSEILTKY
CCCCCCHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHH
LSEFEELTGIKVNAEATPEQQQRQKTTIELSSGKPSFDVVHLSYHVQKRQFEKGGWLADI
HHHHHHHCCEEEECCCCCHHHHHHCCEEEECCCCCCEEEEEEEEHHHHHHHHCCCCCHHH
SGFLKDASLTDPSLVESDFAEAGLAFAKDADGVLRSLPFSVDYWIIYWNKALFEKKGLAY
HHHHHCCCCCCCHHHHHHHHHHCCHHHCCHHHHHHHCCCCEEEEEEEECHHHHHHCCCCC
PTSFEELASAAEALTDPSTNTYGFVARGLKNANTPVWTTLLLGYGSSPLGPDGKLRTTSQ
CCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEECCHH
EAIDAAKLYQRLMTKTAPPGVSGFNWAEAQSAFLQGKIGMWLDGVGFAPPIENPEKSRVV
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHH
GQVGYGVMPKGPKAQAAGTFGDGLGVVAASQKKEAAYLFCQWAISHDMGARLLQAGAGVP
HHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHCCCCC
FRQSVLEDAKVREGVKMPGTWLDAVAGSGKISQLALPVIIPVTEFRDIYGVGLTNMIGGA
HHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHEECEEEEEHHHHHHHHHCCHHHHHCCC
DPETELKAATAQFEPVLAKSEG
CCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]