BacMap

Definition	Syntrophus aciditrophicus SB chromosome, complete genome.
Accession	NC_007759
Length	3,179,300

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The map label for this gene is rfbB [H]

Identifier: 85860113

GI number: 85860113

Start: 2320538

End: 2321824

Strand: Direct

Name: rfbB [H]

Synonym: SYN_00824

Alternate gene names: 85860113

Gene position: 2320538-2321824 (Clockwise)

Preceding gene: 85860112

Following gene: 85860114

Centisome position: 72.99

GC content: 42.97

Gene sequence:

>1287_bases
ATGTCTGATATCGTCATCAAAGCTGAAAACCTTGGTAAAAAATATATCATCGGCCACCAGGCAGAAAACGGCCGATATCA
GGCTTTGCGTGACGTACTGATGCATAATGCGCAGACTCTCTGGAACAAAACGAAAGACCTTGCCAAGGGCAATCCTCTCA
TTCATGGCGATACGCTGGAAGAGGTATGGGCTCTCAAAGATGTCAGTTTTGAAATCCGCCGAGGTGAAGCAGTGGGCATC
ATTGGCCGTAACGGTGCCGGAAAAAGTACGCTGTTGAAGATTTTAAGCCGCATTACGGATCCTTCAGCCGGACGGGTAAC
CATAGATGGCCGGGTTGCCAGCCTGCTGGAAGTGGGGACGGGCTTTCATCCGGAACTTAGCGGCCGTGAAAATATATATC
TGAATGGCACCATCTTGGGCATGTCCCGGAAAGAAATAAATCAGAAATTCGATGAGATAGTGGACTTTGCTGGGATTGAG
AAATACTTGGATACACCGGTCAAGCGGTACTCCAGCGGGATGTATGTACGCTTGGCGTTTGCCGTCGCAGCTCATCTTGA
ACCAGAAATCCTGGTGGTGGATGAGGTGCTGGCGGTTGGTGATGCTGAATTTCAGAAAAAGTGTTTGGGAAAAATGGGAG
ATGTGACAAAAGAAGGACGAACCGTGCTGTTTGTAAGCCATAATATGGTTGCATTGTCTGCACTCTGTTTTCGTTCGATT
AATTTAGACTCTGGAAAAATCATCTATAACGGGCATGTTGACACTGGTGTTCTTATATATATGAATGGATTGTCAAATAT
TGATAATCCAATATCTTACAAAACTAGATCAGCCACAGGCACTGGAGAAATGAAAATTATAAATTCATTTTTATTAAGAA
ATGGCAAACCAACATTATCAAACGTAGCTTGCGGCGACAAAGTGGATATTTGCATTGAGTTTGAATGTTGCACAGAAAAA
CCCCGATTCCACTTTGCACTTGATATATACAATTCCAAAGGAAACCGCATTGCTTATTGTAATTCTCTTTATACTATGGG
TGTAAGTTGGGTTCAGTTGCCCAAGATATTTCTGGCTAAATGTTCTTTTCCAAAGTTACCATTCTTCCCAGATGAATACA
GAGTTGATATATCTATTCATTGTAATGATGAGCGAGCGGACTATCTGCAAGGTGCGCTGTCTTTAAAAGTTTATGAAGGA
GATTTTTATGGTAGCGGGAAAATACCACCTATCAGTGGTGCCTCACCCATCATGCTACTCGAACACAAATGGACAATCGA
CAATTAA

Upstream 100 bases:

>100_bases
GCTCAGCGTCGTGATTACAGTCTTTTTCCTCTGGCTTGGTGTGTCCCGATTCCGCAAGACGGAAAAGTCCTTTGCAGATC
TGATTTAGGAAAAGGGAATC

Downstream 100 bases:

>100_bases
AAAGCAAAGCATTGCGATTAAAAAAATTTGGCTCACGTTTAGAGTTTCTTGAAATTAGGAATTACGATGAGAGTCGCTTT
TTTTATCCATTACGCTGAAC

Product: ABC transporter ATP-binding protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MSDIVIKAENLGKKYIIGHQAENGRYQALRDVLMHNAQTLWNKTKDLAKGNPLIHGDTLEEVWALKDVSFEIRRGEAVGI
IGRNGAGKSTLLKILSRITDPSAGRVTIDGRVASLLEVGTGFHPELSGRENIYLNGTILGMSRKEINQKFDEIVDFAGIE
KYLDTPVKRYSSGMYVRLAFAVAAHLEPEILVVDEVLAVGDAEFQKKCLGKMGDVTKEGRTVLFVSHNMVALSALCFRSI
NLDSGKIIYNGHVDTGVLIYMNGLSNIDNPISYKTRSATGTGEMKIINSFLLRNGKPTLSNVACGDKVDICIEFECCTEK
PRFHFALDIYNSKGNRIAYCNSLYTMGVSWVQLPKIFLAKCSFPKLPFFPDEYRVDISIHCNDERADYLQGALSLKVYEG
DFYGSGKIPPISGASPIMLLEHKWTIDN

Sequences:

>Translated_428_residues
MSDIVIKAENLGKKYIIGHQAENGRYQALRDVLMHNAQTLWNKTKDLAKGNPLIHGDTLEEVWALKDVSFEIRRGEAVGI
IGRNGAGKSTLLKILSRITDPSAGRVTIDGRVASLLEVGTGFHPELSGRENIYLNGTILGMSRKEINQKFDEIVDFAGIE
KYLDTPVKRYSSGMYVRLAFAVAAHLEPEILVVDEVLAVGDAEFQKKCLGKMGDVTKEGRTVLFVSHNMVALSALCFRSI
NLDSGKIIYNGHVDTGVLIYMNGLSNIDNPISYKTRSATGTGEMKIINSFLLRNGKPTLSNVACGDKVDICIEFECCTEK
PRFHFALDIYNSKGNRIAYCNSLYTMGVSWVQLPKIFLAKCSFPKLPFFPDEYRVDISIHCNDERADYLQGALSLKVYEG
DFYGSGKIPPISGASPIMLLEHKWTIDN
>Mature_427_residues
SDIVIKAENLGKKYIIGHQAENGRYQALRDVLMHNAQTLWNKTKDLAKGNPLIHGDTLEEVWALKDVSFEIRRGEAVGII
GRNGAGKSTLLKILSRITDPSAGRVTIDGRVASLLEVGTGFHPELSGRENIYLNGTILGMSRKEINQKFDEIVDFAGIEK
YLDTPVKRYSSGMYVRLAFAVAAHLEPEILVVDEVLAVGDAEFQKKCLGKMGDVTKEGRTVLFVSHNMVALSALCFRSIN
LDSGKIIYNGHVDTGVLIYMNGLSNIDNPISYKTRSATGTGEMKIINSFLLRNGKPTLSNVACGDKVDICIEFECCTEKP
RFHFALDIYNSKGNRIAYCNSLYTMGVSWVQLPKIFLAKCSFPKLPFFPDEYRVDISIHCNDERADYLQGALSLKVYEGD
FYGSGKIPPISGASPIMLLEHKWTIDN

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=198, Percent_Identity=27.2727272727273, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI27436953, Length=190, Percent_Identity=27.8947368421053, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI6005701, Length=192, Percent_Identity=28.125, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI105990541, Length=178, Percent_Identity=30.3370786516854, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI27477115, Length=192, Percent_Identity=26.5625, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI31657092, Length=195, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI150417984, Length=194, Percent_Identity=27.8350515463918, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI45446740, Length=197, Percent_Identity=27.9187817258883, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI47078218, Length=197, Percent_Identity=27.9187817258883, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI27881501, Length=213, Percent_Identity=26.2910798122066, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI30795238, Length=213, Percent_Identity=26.2910798122066, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI4505771, Length=217, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI9961252, Length=217, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI42741659, Length=224, Percent_Identity=26.7857142857143, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI27262624, Length=255, Percent_Identity=23.921568627451, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI27262626, Length=255, Percent_Identity=23.921568627451, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI21536376, Length=202, Percent_Identity=27.7227722772277, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI9961250, Length=224, Percent_Identity=28.125, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI116734710, Length=177, Percent_Identity=24.2937853107345, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI255708477, Length=211, Percent_Identity=27.9620853080569, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI148612844, Length=211, Percent_Identity=27.9620853080569, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1788210, Length=199, Percent_Identity=32.1608040201005, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788225, Length=218, Percent_Identity=27.9816513761468, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790467, Length=202, Percent_Identity=28.2178217821782, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787029, Length=205, Percent_Identity=27.3170731707317, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081709, Length=198, Percent_Identity=26.2626262626263, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789032, Length=209, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=199, Percent_Identity=24.1206030150754, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787758, Length=231, Percent_Identity=26.8398268398268, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=26.4423076923077, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1786703, Length=204, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787112, Length=202, Percent_Identity=30.6930693069307, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI48994943, Length=199, Percent_Identity=25.6281407035176, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786319, Length=203, Percent_Identity=26.1083743842365, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI48995001, Length=203, Percent_Identity=27.0935960591133, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786253, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787089, Length=207, Percent_Identity=24.6376811594203, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1790525, Length=218, Percent_Identity=27.0642201834862, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789672, Length=232, Percent_Identity=26.7241379310345, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788897, Length=227, Percent_Identity=23.7885462555066, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788450, Length=240, Percent_Identity=24.5833333333333, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1789873, Length=200, Percent_Identity=28.5, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=25.2252252252252, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788761, Length=198, Percent_Identity=25.7575757575758, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789962, Length=234, Percent_Identity=24.7863247863248, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=26, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786872, Length=189, Percent_Identity=26.984126984127, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786803, Length=203, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87081782, Length=202, Percent_Identity=24.2574257425743, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786981, Length=181, Percent_Identity=30.3867403314917, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1787712, Length=212, Percent_Identity=25.4716981132075, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI87082267, Length=192, Percent_Identity=23.9583333333333, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=218, Percent_Identity=28.8990825688073, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17565586, Length=184, Percent_Identity=28.2608695652174, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=211, Percent_Identity=27.9620853080569, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=211, Percent_Identity=27.0142180094787, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=220, Percent_Identity=27.7272727272727, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=224, Percent_Identity=27.2321428571429, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24666092, Length=202, Percent_Identity=29.2079207920792, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI116007184, Length=186, Percent_Identity=26.8817204301075, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI221500365, Length=186, Percent_Identity=26.8817204301075, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI221512771, Length=184, Percent_Identity=27.7173913043478, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24643674, Length=222, Percent_Identity=24.3243243243243, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24659289, Length=210, Percent_Identity=27.6190476190476, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281363262, Length=189, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24653245, Length=189, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24648314, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 47475; Mature: 47344

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIVIKAENLGKKYIIGHQAENGRYQALRDVLMHNAQTLWNKTKDLAKGNPLIHGDTLE
CCCEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEECCCHH
EVWALKDVSFEIRRGEAVGIIGRNGAGKSTLLKILSRITDPSAGRVTIDGRVASLLEVGT
HHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCC
GFHPELSGRENIYLNGTILGMSRKEINQKFDEIVDFAGIEKYLDTPVKRYSSGMYVRLAF
CCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEE
AVAAHLEPEILVVDEVLAVGDAEFQKKCLGKMGDVTKEGRTVLFVSHNMVALSALCFRSI
HHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHC
NLDSGKIIYNGHVDTGVLIYMNGLSNIDNPISYKTRSATGTGEMKIINSFLLRNGKPTLS
CCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCC
NVACGDKVDICIEFECCTEKPRFHFALDIYNSKGNRIAYCNSLYTMGVSWVQLPKIFLAK
CCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCHHHHCCHHHHHHHHHHHH
CSFPKLPFFPDEYRVDISIHCNDERADYLQGALSLKVYEGDFYGSGKIPPISGASPIMLL
CCCCCCCCCCCCEEEEEEEEECCCHHHHHCCEEEEEEEECCEECCCCCCCCCCCCCEEEE
EHKWTIDN
EEEECCCC
>Mature Secondary Structure 
SDIVIKAENLGKKYIIGHQAENGRYQALRDVLMHNAQTLWNKTKDLAKGNPLIHGDTLE
CCEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEECCCHH
EVWALKDVSFEIRRGEAVGIIGRNGAGKSTLLKILSRITDPSAGRVTIDGRVASLLEVGT
HHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCC
GFHPELSGRENIYLNGTILGMSRKEINQKFDEIVDFAGIEKYLDTPVKRYSSGMYVRLAF
CCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEE
AVAAHLEPEILVVDEVLAVGDAEFQKKCLGKMGDVTKEGRTVLFVSHNMVALSALCFRSI
HHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHC
NLDSGKIIYNGHVDTGVLIYMNGLSNIDNPISYKTRSATGTGEMKIINSFLLRNGKPTLS
CCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCC
NVACGDKVDICIEFECCTEKPRFHFALDIYNSKGNRIAYCNSLYTMGVSWVQLPKIFLAK
CCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCHHHHCCHHHHHHHHHHHH
CSFPKLPFFPDEYRVDISIHCNDERADYLQGALSLKVYEGDFYGSGKIPPISGASPIMLL
CCCCCCCCCCCCEEEEEEEEECCCHHHHHCCEEEEEEEECCEECCCCCCCCCCCCCEEEE
EHKWTIDN
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]