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The map label for this gene is rfbA [H]

Identifier: 85860112

GI number: 85860112

Start: 2319704

End: 2320525

Strand: Direct

Name: rfbA [H]

Synonym: SYN_00825

Alternate gene names: 85860112

Gene position: 2319704-2320525 (Clockwise)

Preceding gene: 85860111

Following gene: 85860113

Centisome position: 72.96

GC content: 48.05

Gene sequence:

>822_bases
ATGAGTAAAATTATTATTGAGGCAGGTCACACAGAGAAAAACTACTGGACCGATCTCTGGCGTTATCGGGAGCTTTTTCT
GGTTCTGGCATGGCGGGATGTCGCTGTGCGCTATAAACAAACTGCTATTGGAATTCTCTGGGCAATCCTTCGCCCTTTGC
TGACGATGATCGTTTTCACCATCATTTTTGGCCGAATTGCCAAACTTCCCAGCGATGGAAGCTCACCTTACGCCGTGATG
GTCCTTGCCGCCATGCTCCCCTGGTCTCTTTTCTCAAATTCTCTGATGGATTCATCTAATAGCCTGATTGGCAACGCGAA
TCTGATCAGCAAAGTTTATTTTCCAAGAATGATTATTCCCGCAGCAACCGTCGTAACCGCTTTCATAGATTTTCTTATCA
GCTTTGTCATCCTGATAGGAATCATGGTCTACTATCAATTTGCACCAGGTTGGCATATGCTGTTGCTGCCGATTTTCACA
ATCCTGGCCTTGCTCGCCAGTTTAGGACCCGGCCTCTGGATTACGGCACTGAATGTGAAGTATCGCGATTTCCGCTACGT
CATCCCGTTTGTGGTCCAGTTGGGACTTTATGTTTCCCCGGTAGGATTCAGCAGTAAAGTCGTCCCTGAAAAATGGCGAC
TGATTTACAGCCTCAACCCTATGGTGGGAGTCATAGACGGTTTCCGCTGGTGTATCCTGGGAGGCGCCAGTCCTGTATAT
ATGCCCGGTTTCCTGCTCAGCGTCGTGATTACAGTCTTTTTCCTCTGGCTTGGTGTGTCCCGATTCCGCAAGACGGAAAA
GTCCTTTGCAGATCTGATTTAG

Upstream 100 bases:

>100_bases
CGTCGGGGATTTATCCCGTCCGCCGACGGAAGAGACCTGGAATGTGATTGTGGCTGGCAGGAAAATTATAAATGCCCGCT
GATAAAGAATTCGTAAAAAC

Downstream 100 bases:

>100_bases
GAAAAGGGAATCATGTCTGATATCGTCATCAAAGCTGAAAACCTTGGTAAAAAATATATCATCGGCCACCAGGCAGAAAA
CGGCCGATATCAGGCTTTGC

Product: o-antigen export system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSKIIIEAGHTEKNYWTDLWRYRELFLVLAWRDVAVRYKQTAIGILWAILRPLLTMIVFTIIFGRIAKLPSDGSSPYAVM
VLAAMLPWSLFSNSLMDSSNSLIGNANLISKVYFPRMIIPAATVVTAFIDFLISFVILIGIMVYYQFAPGWHMLLLPIFT
ILALLASLGPGLWITALNVKYRDFRYVIPFVVQLGLYVSPVGFSSKVVPEKWRLIYSLNPMVGVIDGFRWCILGGASPVY
MPGFLLSVVITVFFLWLGVSRFRKTEKSFADLI

Sequences:

>Translated_273_residues
MSKIIIEAGHTEKNYWTDLWRYRELFLVLAWRDVAVRYKQTAIGILWAILRPLLTMIVFTIIFGRIAKLPSDGSSPYAVM
VLAAMLPWSLFSNSLMDSSNSLIGNANLISKVYFPRMIIPAATVVTAFIDFLISFVILIGIMVYYQFAPGWHMLLLPIFT
ILALLASLGPGLWITALNVKYRDFRYVIPFVVQLGLYVSPVGFSSKVVPEKWRLIYSLNPMVGVIDGFRWCILGGASPVY
MPGFLLSVVITVFFLWLGVSRFRKTEKSFADLI
>Mature_272_residues
SKIIIEAGHTEKNYWTDLWRYRELFLVLAWRDVAVRYKQTAIGILWAILRPLLTMIVFTIIFGRIAKLPSDGSSPYAVMV
LAAMLPWSLFSNSLMDSSNSLIGNANLISKVYFPRMIIPAATVVTAFIDFLISFVILIGIMVYYQFAPGWHMLLLPIFTI
LALLASLGPGLWITALNVKYRDFRYVIPFVVQLGLYVSPVGFSSKVVPEKWRLIYSLNPMVGVIDGFRWCILGGASPVYM
PGFLLSVVITVFFLWLGVSRFRKTEKSFADLI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30924; Mature: 30792

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIIIEAGHTEKNYWTDLWRYRELFLVLAWRDVAVRYKQTAIGILWAILRPLLTMIVFT
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFGRIAKLPSDGSSPYAVMVLAAMLPWSLFSNSLMDSSNSLIGNANLISKVYFPRMIIP
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
AATVVTAFIDFLISFVILIGIMVYYQFAPGWHMLLLPIFTILALLASLGPGLWITALNVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
YRDFRYVIPFVVQLGLYVSPVGFSSKVVPEKWRLIYSLNPMVGVIDGFRWCILGGASPVY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHEEEECCHHHHHHHHHHHHHCCCCCCHH
MPGFLLSVVITVFFLWLGVSRFRKTEKSFADLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKIIIEAGHTEKNYWTDLWRYRELFLVLAWRDVAVRYKQTAIGILWAILRPLLTMIVFT
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFGRIAKLPSDGSSPYAVMVLAAMLPWSLFSNSLMDSSNSLIGNANLISKVYFPRMIIP
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
AATVVTAFIDFLISFVILIGIMVYYQFAPGWHMLLLPIFTILALLASLGPGLWITALNVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
YRDFRYVIPFVVQLGLYVSPVGFSSKVVPEKWRLIYSLNPMVGVIDGFRWCILGGASPVY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHEEEECCHHHHHHHHHHHHHCCCCCCHH
MPGFLLSVVITVFFLWLGVSRFRKTEKSFADLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]