| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
Click here to switch to the map view.
The map label for this gene is 85860079
Identifier: 85860079
GI number: 85860079
Start: 2287250
End: 2288221
Strand: Direct
Name: 85860079
Synonym: SYN_01554
Alternate gene names: NA
Gene position: 2287250-2288221 (Clockwise)
Preceding gene: 85860078
Following gene: 85860080
Centisome position: 71.94
GC content: 53.19
Gene sequence:
>972_bases ATGGCAAAGATGATTAAAAAATCGGGGCAACGAGGAATCGCCCTGATTGTTGTCCTCTGCATGACTTCGATCATGGTGGC CGCCGCGGTTCAAATGATTTCCCAGACCCGGCGGGAGATCACCGAAACGACGAATCTCAGGGACGGCCTGCAGGCGCTGT ATCTGGCCCGGTCGGGAGTCGCTTTCAGCGAAGCCAGCCTCAATGCGGAGAAGACTAACTATGACGGGCTGGATCAGCCC TGGGCGGATGCGAAAACCTGGTCGGCCAGATTTAATGCCTTGATCGAGGAAGGTCAAAGCTATATCGTCATTGAGGATGA AACGGGAAAGATTCCGATCAATTTCCTGATCAATAAGGATGGCGCGGAGAACGCGGAAATCCGAAATCTGCTGGTCCGCT TTCTGAACTTGCCGGAATGGAACCTGACGGAAGAACAGAGTGGAATCATTGTCGATTCGATAAAAGACTGGATGATATCG AATTCCCAGCCGTCGGAAGGTTCAGATTCTTCCGACACGGAATCAGAGCCCCAGAGGAAAGGTCCATTTCGATTTCCGGA AGAGATTCTGAAAACCGGCGCCGTGTCCCGGGATCTTCTCTATGGAACGGCGGGGAAACCAGGACTATGTGCTTATGTCA CCCTTTACGGCAAGGGAAAAATCAACATCAACACGGCGCCCGGACCGGTTCTGATGGCTCTCTTTCCGGGGATCAGCAAG GACACGCTGGAGCAGATCGATTTCTCCAGGCGCAGGGGGGAGGCTAAACTCGATGACCCGGCCTGGTACAGACAGGTTAT CGGCACATCCGGCCTGAATCCGGCTTCGGAACTGATCATGACCAGAAGTGAAGCATTCCGGATCACCTCCACCGGCGTGC TGGGAAGCTGTCGAAGAACCGTAACGGGAATCTTGGAAAAGGACGGAAAATCGGAGAAGTTCAAGCTCCGGTTTCTGTAT GGAAATTCATGA
Upstream 100 bases:
>100_bases TTCTGGAACTCACACTGGTCAATCCTGAGGATGAGAGCAAGCCGTTTCACTTCATGACCCGAGTCCATCCAGCCAACATG AGTCCGCAGGAGTCCTGAAC
Downstream 100 bases:
>100_bases ATAAGAAAACCATTGGCATTGATATCGGTACCGCCTGTTTAAAGGCGGTTTCATTGACCTTCGACTACAAAAGCAGGAAA AGTATCGCGGCATCCGCTCT
Product: general secretory pathway protein K
Products: NA
Alternate protein names: Type II Secretory Pathway Component PulK-Like Protein; General Secretory Pathway Protein K
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MAKMIKKSGQRGIALIVVLCMTSIMVAAAVQMISQTRREITETTNLRDGLQALYLARSGVAFSEASLNAEKTNYDGLDQP WADAKTWSARFNALIEEGQSYIVIEDETGKIPINFLINKDGAENAEIRNLLVRFLNLPEWNLTEEQSGIIVDSIKDWMIS NSQPSEGSDSSDTESEPQRKGPFRFPEEILKTGAVSRDLLYGTAGKPGLCAYVTLYGKGKININTAPGPVLMALFPGISK DTLEQIDFSRRRGEAKLDDPAWYRQVIGTSGLNPASELIMTRSEAFRITSTGVLGSCRRTVTGILEKDGKSEKFKLRFLY GNS
Sequences:
>Translated_323_residues MAKMIKKSGQRGIALIVVLCMTSIMVAAAVQMISQTRREITETTNLRDGLQALYLARSGVAFSEASLNAEKTNYDGLDQP WADAKTWSARFNALIEEGQSYIVIEDETGKIPINFLINKDGAENAEIRNLLVRFLNLPEWNLTEEQSGIIVDSIKDWMIS NSQPSEGSDSSDTESEPQRKGPFRFPEEILKTGAVSRDLLYGTAGKPGLCAYVTLYGKGKININTAPGPVLMALFPGISK DTLEQIDFSRRRGEAKLDDPAWYRQVIGTSGLNPASELIMTRSEAFRITSTGVLGSCRRTVTGILEKDGKSEKFKLRFLY GNS >Mature_322_residues AKMIKKSGQRGIALIVVLCMTSIMVAAAVQMISQTRREITETTNLRDGLQALYLARSGVAFSEASLNAEKTNYDGLDQPW ADAKTWSARFNALIEEGQSYIVIEDETGKIPINFLINKDGAENAEIRNLLVRFLNLPEWNLTEEQSGIIVDSIKDWMISN SQPSEGSDSSDTESEPQRKGPFRFPEEILKTGAVSRDLLYGTAGKPGLCAYVTLYGKGKININTAPGPVLMALFPGISKD TLEQIDFSRRRGEAKLDDPAWYRQVIGTSGLNPASELIMTRSEAFRITSTGVLGSCRRTVTGILEKDGKSEKFKLRFLYG NS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35632; Mature: 35501
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKMIKKSGQRGIALIVVLCMTSIMVAAAVQMISQTRREITETTNLRDGLQALYLARSGV CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AFSEASLNAEKTNYDGLDQPWADAKTWSARFNALIEEGQSYIVIEDETGKIPINFLINKD EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECC GAENAEIRNLLVRFLNLPEWNLTEEQSGIIVDSIKDWMISNSQPSEGSDSSDTESEPQRK CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEHCCHHHHHCCCCCCCCCCCCCCCCCCCCCC GPFRFPEEILKTGAVSRDLLYGTAGKPGLCAYVTLYGKGKININTAPGPVLMALFPGISK CCCCCHHHHHHCCCCCHHHEEECCCCCCEEEEEEEEECCEEEEECCCCHHHHHHCCCCCH DTLEQIDFSRRRGEAKLDDPAWYRQVIGTSGLNPASELIMTRSEAFRITSTGVLGSCRRT HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCHHHHHHHH VTGILEKDGKSEKFKLRFLYGNS HHHHHHCCCCCCEEEEEEEECCC >Mature Secondary Structure AKMIKKSGQRGIALIVVLCMTSIMVAAAVQMISQTRREITETTNLRDGLQALYLARSGV CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AFSEASLNAEKTNYDGLDQPWADAKTWSARFNALIEEGQSYIVIEDETGKIPINFLINKD EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECC GAENAEIRNLLVRFLNLPEWNLTEEQSGIIVDSIKDWMISNSQPSEGSDSSDTESEPQRK CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEHCCHHHHHCCCCCCCCCCCCCCCCCCCCCC GPFRFPEEILKTGAVSRDLLYGTAGKPGLCAYVTLYGKGKININTAPGPVLMALFPGISK CCCCCHHHHHHCCCCCHHHEEECCCCCCEEEEEEEEECCEEEEECCCCHHHHHHCCCCCH DTLEQIDFSRRRGEAKLDDPAWYRQVIGTSGLNPASELIMTRSEAFRITSTGVLGSCRRT HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCHHHHHHHH VTGILEKDGKSEKFKLRFLYGNS HHHHHHCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA