| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85860080
Identifier: 85860080
GI number: 85860080
Start: 2288218
End: 2289747
Strand: Direct
Name: 85860080
Synonym: SYN_01555
Alternate gene names: NA
Gene position: 2288218-2289747 (Clockwise)
Preceding gene: 85860079
Following gene: 85860081
Centisome position: 71.97
GC content: 53.14
Gene sequence:
>1530_bases ATGAATAAGAAAACCATTGGCATTGATATCGGTACCGCCTGTTTAAAGGCGGTTTCATTGACCTTCGACTACAAAAGCAG GAAAAGTATCGCGGCATCCGCTCTGATCGACCTGGATGCTGCCGATGGCCTGGAACAGGCTCTGCAGAAACTTTTCACGG ACAAGCATTTTAAAGAAGGGGAATGCGTCTTTTCCATTCCAGCGGGCTCCTGTTCGTTTCGCAATCTTTCCCTTCCATTC ACTGAAGAAAAGACGATCGATGAGATCATCACATATGAAATGGAGCCTCACATTCCGGATCCCATCGAAACCGTTCTGGT CGATTCTCTGCCGCCTCGTCACACCCCCGAATCGACAACGGTTCTGGCTGCCGCGGCCAGAAAGCAGGATGTTCAGGAGC GCGTGCGCTATGCGGCCGGCATCGGCATGGCTGTTGTCGACACGGACGCTGTTCCCATCGCTATGAATCTTCTGGAAAAG AATATCCCCAATGCTTCCGGGATTCTTCTGGATATCGGCGCACATGCTTCCGTTGCCGTTTTCTTTCAGAGCGGCTCCAT CGTTCACGTCAGATCCTTTCCCTGGGGGATCGCGGACTCTCCCGGAACATTCGGGTTTCTTCCGCATTCCGACCCCGATG AGAACAGGAAAAGCCCAGCCGCAGAAAAGGACGGGGAGTTGCAGAACCAGGATAGAAAAGAACGGAAACGATTTGAGTTT TGCAGACAGATCGCCGATACGCTGCAATTCCTCGCGGAAAACAGTCTTCTCGAAGAAATGCCCTCCCGCATTTACCTGAC CGGAGGCGGCGCGCTGAGCGCGACCCTGCGGGAGGACCTGGAAAAGTTCTTCAAAACTCCGGTAGAGGTTGTCGACCTGC TCAAAATGAAGGGCATTCCTCTTCCGGGGAAGAACCGACTCTCCTGGAACGCGCCTCTCATGAATCAGGCTCTGGCCCTC GCCCTTCGAGGCGGCAACGGATCGGCGGGTTTCAATTTCAATAAGACCGAAAAAGCCGTCACAAATGCAAGAAACGGGAT GAAGAGTCAACTCCGGTGGACCGCTCTGATGGCGGTTATCCTGTTCTTTGCCCTGGGAAGCAACCTGGCCGCCGGATATT ACGCGGACAGCAGGAAACTTCGCCATCTCAAGGAAGAAACCACGAAAACCTTTAAAAACTGCTGTCCGGAAGTCACCCGG ATCGTCGATCCGGTTCGTCAGTTACAGCAGAAGATCATTGAAGCCCGGGGGTTTTCCAGGGGAGCGGAACAGGGCTCACT TTTCCTCGACTCCTGGAAAAAAGCGATGGACACATTGCCCGAGGCGTCCGGGATTGTGATCAGGGAACTCAGCTATAATC AGATCGTCCTGGAAATCTCCGGAGAGGCGTCCGACTTCCAGGCCGTCACCCGCTGGAAAGGCGAACTGGAAAAATCCCGA TCCTTCTCCAACATCCAGATGCAGTTTGGCAGCGGCACGAACAAAGACGCGAAAAAAACGTTCAAATTAAGGATGACCCA TGTTCTTTAA
Upstream 100 bases:
>100_bases CCACCGGCGTGCTGGGAAGCTGTCGAAGAACCGTAACGGGAATCTTGGAAAAGGACGGAAAATCGGAGAAGTTCAAGCTC CGGTTTCTGTATGGAAATTC
Downstream 100 bases:
>100_bases AACTTTTATGCCATACTGGTCCGGTCTGCGGCAGCGGGAGCGAATCGTCCTGGGCGGAGGGTTGATCTGCCTTTTTCTGC TCCTGCTTACTCATTTTATT
Product: general secretory pathway protein L
Products: NA
Alternate protein names: General Secretory Pathway Protein L
Number of amino acids: Translated: 509; Mature: 509
Protein sequence:
>509_residues MNKKTIGIDIGTACLKAVSLTFDYKSRKSIAASALIDLDAADGLEQALQKLFTDKHFKEGECVFSIPAGSCSFRNLSLPF TEEKTIDEIITYEMEPHIPDPIETVLVDSLPPRHTPESTTVLAAAARKQDVQERVRYAAGIGMAVVDTDAVPIAMNLLEK NIPNASGILLDIGAHASVAVFFQSGSIVHVRSFPWGIADSPGTFGFLPHSDPDENRKSPAAEKDGELQNQDRKERKRFEF CRQIADTLQFLAENSLLEEMPSRIYLTGGGALSATLREDLEKFFKTPVEVVDLLKMKGIPLPGKNRLSWNAPLMNQALAL ALRGGNGSAGFNFNKTEKAVTNARNGMKSQLRWTALMAVILFFALGSNLAAGYYADSRKLRHLKEETTKTFKNCCPEVTR IVDPVRQLQQKIIEARGFSRGAEQGSLFLDSWKKAMDTLPEASGIVIRELSYNQIVLEISGEASDFQAVTRWKGELEKSR SFSNIQMQFGSGTNKDAKKTFKLRMTHVL
Sequences:
>Translated_509_residues MNKKTIGIDIGTACLKAVSLTFDYKSRKSIAASALIDLDAADGLEQALQKLFTDKHFKEGECVFSIPAGSCSFRNLSLPF TEEKTIDEIITYEMEPHIPDPIETVLVDSLPPRHTPESTTVLAAAARKQDVQERVRYAAGIGMAVVDTDAVPIAMNLLEK NIPNASGILLDIGAHASVAVFFQSGSIVHVRSFPWGIADSPGTFGFLPHSDPDENRKSPAAEKDGELQNQDRKERKRFEF CRQIADTLQFLAENSLLEEMPSRIYLTGGGALSATLREDLEKFFKTPVEVVDLLKMKGIPLPGKNRLSWNAPLMNQALAL ALRGGNGSAGFNFNKTEKAVTNARNGMKSQLRWTALMAVILFFALGSNLAAGYYADSRKLRHLKEETTKTFKNCCPEVTR IVDPVRQLQQKIIEARGFSRGAEQGSLFLDSWKKAMDTLPEASGIVIRELSYNQIVLEISGEASDFQAVTRWKGELEKSR SFSNIQMQFGSGTNKDAKKTFKLRMTHVL >Mature_509_residues MNKKTIGIDIGTACLKAVSLTFDYKSRKSIAASALIDLDAADGLEQALQKLFTDKHFKEGECVFSIPAGSCSFRNLSLPF TEEKTIDEIITYEMEPHIPDPIETVLVDSLPPRHTPESTTVLAAAARKQDVQERVRYAAGIGMAVVDTDAVPIAMNLLEK NIPNASGILLDIGAHASVAVFFQSGSIVHVRSFPWGIADSPGTFGFLPHSDPDENRKSPAAEKDGELQNQDRKERKRFEF CRQIADTLQFLAENSLLEEMPSRIYLTGGGALSATLREDLEKFFKTPVEVVDLLKMKGIPLPGKNRLSWNAPLMNQALAL ALRGGNGSAGFNFNKTEKAVTNARNGMKSQLRWTALMAVILFFALGSNLAAGYYADSRKLRHLKEETTKTFKNCCPEVTR IVDPVRQLQQKIIEARGFSRGAEQGSLFLDSWKKAMDTLPEASGIVIRELSYNQIVLEISGEASDFQAVTRWKGELEKSR SFSNIQMQFGSGTNKDAKKTFKLRMTHVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56241; Mature: 56241
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKTIGIDIGTACLKAVSLTFDYKSRKSIAASALIDLDAADGLEQALQKLFTDKHFKEG CCCCEEEEEHHHHHHHHHHHEECCHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCC ECVFSIPAGSCSFRNLSLPFTEEKTIDEIITYEMEPHIPDPIETVLVDSLPPRHTPESTT CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHH VLAAAARKQDVQERVRYAAGIGMAVVDTDAVPIAMNLLEKNIPNASGILLDIGAHASVAV HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEE FFQSGSIVHVRSFPWGIADSPGTFGFLPHSDPDENRKSPAAEKDGELQNQDRKERKRFEF EEECCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH CRQIADTLQFLAENSLLEEMPSRIYLTGGGALSATLREDLEKFFKTPVEVVDLLKMKGIP HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCC LPGKNRLSWNAPLMNQALALALRGGNGSAGFNFNKTEKAVTNARNGMKSQLRWTALMAVI CCCCCCCCCCCCHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH LFFALGSNLAAGYYADSRKLRHLKEETTKTFKNCCPEVTRIVDPVRQLQQKIIEARGFSR HHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GAEQGSLFLDSWKKAMDTLPEASGIVIRELSYNQIVLEISGEASDFQAVTRWKGELEKSR CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCC SFSNIQMQFGSGTNKDAKKTFKLRMTHVL CCCEEEEEECCCCCHHHHHHHHHEEHHCC >Mature Secondary Structure MNKKTIGIDIGTACLKAVSLTFDYKSRKSIAASALIDLDAADGLEQALQKLFTDKHFKEG CCCCEEEEEHHHHHHHHHHHEECCHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCC ECVFSIPAGSCSFRNLSLPFTEEKTIDEIITYEMEPHIPDPIETVLVDSLPPRHTPESTT CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHH VLAAAARKQDVQERVRYAAGIGMAVVDTDAVPIAMNLLEKNIPNASGILLDIGAHASVAV HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEE FFQSGSIVHVRSFPWGIADSPGTFGFLPHSDPDENRKSPAAEKDGELQNQDRKERKRFEF EEECCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH CRQIADTLQFLAENSLLEEMPSRIYLTGGGALSATLREDLEKFFKTPVEVVDLLKMKGIP HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCC LPGKNRLSWNAPLMNQALALALRGGNGSAGFNFNKTEKAVTNARNGMKSQLRWTALMAVI CCCCCCCCCCCCHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH LFFALGSNLAAGYYADSRKLRHLKEETTKTFKNCCPEVTRIVDPVRQLQQKIIEARGFSR HHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GAEQGSLFLDSWKKAMDTLPEASGIVIRELSYNQIVLEISGEASDFQAVTRWKGELEKSR CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCC SFSNIQMQFGSGTNKDAKKTFKLRMTHVL CCCEEEEEECCCCCHHHHHHHHHEEHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA