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The map label for this gene is secD [H]

Identifier: 85860049

GI number: 85860049

Start: 2260162

End: 2261763

Strand: Direct

Name: secD [H]

Synonym: SYN_01524

Alternate gene names: 85860049

Gene position: 2260162-2261763 (Clockwise)

Preceding gene: 85860048

Following gene: 85860050

Centisome position: 71.09

GC content: 55.43

Gene sequence:

>1602_bases
ATGTTCGGAAGCATAAGAGTGCGGGCTTTCATCGCCCTTGCCGTTATCCTGGTCGCTGTCTTCTATCTGTTTCCTACGCT
GACGGCCGATCTCCCGGAATTCTGGAAAAAGAATCTCCCCAAGGACAGAATTCACCTGGGTCTCGATCTGCAGGGCGGAA
TGCATCTCGTTCTTGAGGTGGATGCGGACAAGGCCATTGAAGCGACCCTGGAAAGGACAGCGGTCGATTTAAAAGAAACG
CTGATGGACAAGCGCATCCGTTTCAAACGGCTGGAACGGTCCACAAGCCAGAACATCACCGTCGAGCTGCCGGACAGTGC
ATCGCGAAGCGCCTTTGACAAAAGCCTCAAAGACTCCTATCCCGACCTTGAAGTCGTCTCCTCGGAAACCGTTGAGGGCA
TCGAACGGGTGTCACTGGGGGTCAGTGAAAGGCGAAAAGATGAAATCCGCAAACTGGCCATCGAACAGAGCCTTGAGACA
ATCCGCAACCGTGTGGACCAGTTCGGCATCACCGAACCGGAAATCGTCCCTCAGGGTAAGGACCGTATTCTCATTCAGCT
CCCGGGCATCAAAGATCCCGGTCGGGCCAAGAACCTGATCGGCAAAACCGCCCTCCTGGAATTCAAGCTGGTTGACGAGG
GACACAGCATTGATGAAGCCCTGAAAGGCAATGTGCCCGAGGGCAGCGCCATCACCTACGGCTGGAATGTCGACAGCCAG
TCCGGACGGCGGACGGAAGTTCCCTATCTTCTGAAGAGCAAGACTCTGCTGACCGGCGACGCTCTGGAAAATGCGCAGGT
CAAGATCAGCGACCGATTCGGCGAACCCCATGTGGCTCTGACGTTCAATTCCCGCGGGGCCGCGGATTTTGAAAGGATTA
CCGGGGAGAATGTCAAGAAGCGACTGGCCATCGTTCTCGATGGGGTTGTCCATTCCGCTCCGGTCATCCAGGAAAAAATT
TCGGGAGGACAGGCACAGATTACCGGGTCTTTCACCATGGAGGAAGCGCGCGATCTGGCCATCGTTCTTCGCGCGGGCGC
CCTTCCCGCCCCTGTAAAGATACTTGAAGAAAGGACCGTCGGCCCTTCGCTGGGACAGGATTCCATCGAGATGGGCATCT
GGGCGTGCGTCATCGCCGGCATTCTGGTCGTACTTTTCATGGTTTTCTACTACAGGCTGTCCGGCATGGTTGCCGATGTC
GCCCTGGTTCTCAATCTGGTTCTCCTTATGGGAGCGATGGCCGCCTTCAAGGCAACGCTAACCCTGCCGGGTATTGCCGG
CATCGTGCTCACCATCGGGATGGCCGTTGATGCCAACGTCCTGATTTTTGAAAGAATCCGTGAAGAACTCCGCACGGAAA
AAACGCCTCGGGCGGCTGTTGAAGCCGGTTACAGCAAGGCCTTTCTCACCATTCTGGACTCCAACGTAACGACGCTGGTG
GCCGCCCTGTTCCTTTTCGGCTTCGGAACCGGTCCGATCAAGGGATTTGCCGTCACTCTGACCATCGGCATCGTCGTCAG
CATGTTCACCGCTATTTTTGTCACAAGGATTATTTTTGATTACTTCGTCTGGAACCGCAGGATCAAGTCCATCAGCATAT
AA

Upstream 100 bases:

>100_bases
TCTTGAAGTGGCCGATAAAGTGCGCGTCAAGGTTTCAAGGGGCTTTATCGCGGCTGTTCTTGAGAAAGCCGGCAAGGAAT
AAGTCTGAAAGGGGAAGTCT

Downstream 100 bases:

>100_bases
AAGAGGGAACTGCAATTTGATACGTCGAGGAGATCTTCATGGAAATCATTAAATCGGAAACCCACTTTAATTTTGTCGCC
ATGATGAAAATGGCGGTTAC

Product: protein translocase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MFGSIRVRAFIALAVILVAVFYLFPTLTADLPEFWKKNLPKDRIHLGLDLQGGMHLVLEVDADKAIEATLERTAVDLKET
LMDKRIRFKRLERSTSQNITVELPDSASRSAFDKSLKDSYPDLEVVSSETVEGIERVSLGVSERRKDEIRKLAIEQSLET
IRNRVDQFGITEPEIVPQGKDRILIQLPGIKDPGRAKNLIGKTALLEFKLVDEGHSIDEALKGNVPEGSAITYGWNVDSQ
SGRRTEVPYLLKSKTLLTGDALENAQVKISDRFGEPHVALTFNSRGAADFERITGENVKKRLAIVLDGVVHSAPVIQEKI
SGGQAQITGSFTMEEARDLAIVLRAGALPAPVKILEERTVGPSLGQDSIEMGIWACVIAGILVVLFMVFYYRLSGMVADV
ALVLNLVLLMGAMAAFKATLTLPGIAGIVLTIGMAVDANVLIFERIREELRTEKTPRAAVEAGYSKAFLTILDSNVTTLV
AALFLFGFGTGPIKGFAVTLTIGIVVSMFTAIFVTRIIFDYFVWNRRIKSISI

Sequences:

>Translated_533_residues
MFGSIRVRAFIALAVILVAVFYLFPTLTADLPEFWKKNLPKDRIHLGLDLQGGMHLVLEVDADKAIEATLERTAVDLKET
LMDKRIRFKRLERSTSQNITVELPDSASRSAFDKSLKDSYPDLEVVSSETVEGIERVSLGVSERRKDEIRKLAIEQSLET
IRNRVDQFGITEPEIVPQGKDRILIQLPGIKDPGRAKNLIGKTALLEFKLVDEGHSIDEALKGNVPEGSAITYGWNVDSQ
SGRRTEVPYLLKSKTLLTGDALENAQVKISDRFGEPHVALTFNSRGAADFERITGENVKKRLAIVLDGVVHSAPVIQEKI
SGGQAQITGSFTMEEARDLAIVLRAGALPAPVKILEERTVGPSLGQDSIEMGIWACVIAGILVVLFMVFYYRLSGMVADV
ALVLNLVLLMGAMAAFKATLTLPGIAGIVLTIGMAVDANVLIFERIREELRTEKTPRAAVEAGYSKAFLTILDSNVTTLV
AALFLFGFGTGPIKGFAVTLTIGIVVSMFTAIFVTRIIFDYFVWNRRIKSISI
>Mature_533_residues
MFGSIRVRAFIALAVILVAVFYLFPTLTADLPEFWKKNLPKDRIHLGLDLQGGMHLVLEVDADKAIEATLERTAVDLKET
LMDKRIRFKRLERSTSQNITVELPDSASRSAFDKSLKDSYPDLEVVSSETVEGIERVSLGVSERRKDEIRKLAIEQSLET
IRNRVDQFGITEPEIVPQGKDRILIQLPGIKDPGRAKNLIGKTALLEFKLVDEGHSIDEALKGNVPEGSAITYGWNVDSQ
SGRRTEVPYLLKSKTLLTGDALENAQVKISDRFGEPHVALTFNSRGAADFERITGENVKKRLAIVLDGVVHSAPVIQEKI
SGGQAQITGSFTMEEARDLAIVLRAGALPAPVKILEERTVGPSLGQDSIEMGIWACVIAGILVVLFMVFYYRLSGMVADV
ALVLNLVLLMGAMAAFKATLTLPGIAGIVLTIGMAVDANVLIFERIREELRTEKTPRAAVEAGYSKAFLTILDSNVTTLV
AALFLFGFGTGPIKGFAVTLTIGIVVSMFTAIFVTRIIFDYFVWNRRIKSISI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=519, Percent_Identity=38.3429672447013, Blast_Score=346, Evalue=3e-96,
Organism=Escherichia coli, GI1786610, Length=159, Percent_Identity=28.9308176100629, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 58504; Mature: 58504

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGSIRVRAFIALAVILVAVFYLFPTLTADLPEFWKKNLPKDRIHLGLDLQGGMHLVLEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEECCCEEEEEEE
DADKAIEATLERTAVDLKETLMDKRIRFKRLERSTSQNITVELPDSASRSAFDKSLKDSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC
PDLEVVSSETVEGIERVSLGVSERRKDEIRKLAIEQSLETIRNRVDQFGITEPEIVPQGK
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DRILIQLPGIKDPGRAKNLIGKTALLEFKLVDEGHSIDEALKGNVPEGSAITYGWNVDSQ
CEEEEEECCCCCCCHHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCCCC
SGRRTEVPYLLKSKTLLTGDALENAQVKISDRFGEPHVALTFNSRGAADFERITGENVKK
CCCCCCCCHHHCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHCCHHHHH
RLAIVLDGVVHSAPVIQEKISGGQAQITGSFTMEEARDLAIVLRAGALPAPVKILEERTV
HHHHHHHHHHHCCHHHHHHHCCCCEEEEECEEHHHHHCEEEEEECCCCCCHHHHHHHCCC
GPSLGQDSIEMGIWACVIAGILVVLFMVFYYRLSGMVADVALVLNLVLLMGAMAAFKATL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPGIAGIVLTIGMAVDANVLIFERIREELRTEKTPRAAVEAGYSKAFLTILDSNVTTLV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEHEECCCHHHHH
AALFLFGFGTGPIKGFAVTLTIGIVVSMFTAIFVTRIIFDYFVWNRRIKSISI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFGSIRVRAFIALAVILVAVFYLFPTLTADLPEFWKKNLPKDRIHLGLDLQGGMHLVLEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEECCCEEEEEEE
DADKAIEATLERTAVDLKETLMDKRIRFKRLERSTSQNITVELPDSASRSAFDKSLKDSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC
PDLEVVSSETVEGIERVSLGVSERRKDEIRKLAIEQSLETIRNRVDQFGITEPEIVPQGK
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DRILIQLPGIKDPGRAKNLIGKTALLEFKLVDEGHSIDEALKGNVPEGSAITYGWNVDSQ
CEEEEEECCCCCCCHHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCCCC
SGRRTEVPYLLKSKTLLTGDALENAQVKISDRFGEPHVALTFNSRGAADFERITGENVKK
CCCCCCCCHHHCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHCCHHHHH
RLAIVLDGVVHSAPVIQEKISGGQAQITGSFTMEEARDLAIVLRAGALPAPVKILEERTV
HHHHHHHHHHHCCHHHHHHHCCCCEEEEECEEHHHHHCEEEEEECCCCCCHHHHHHHCCC
GPSLGQDSIEMGIWACVIAGILVVLFMVFYYRLSGMVADVALVLNLVLLMGAMAAFKATL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPGIAGIVLTIGMAVDANVLIFERIREELRTEKTPRAAVEAGYSKAFLTILDSNVTTLV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEHEECCCHHHHH
AALFLFGFGTGPIKGFAVTLTIGIVVSMFTAIFVTRIIFDYFVWNRRIKSISI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA