| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is tgt [H]
Identifier: 85860047
GI number: 85860047
Start: 2258633
End: 2259763
Strand: Direct
Name: tgt [H]
Synonym: SYN_00038
Alternate gene names: 85860047
Gene position: 2258633-2259763 (Clockwise)
Preceding gene: 85860046
Following gene: 85860048
Centisome position: 71.04
GC content: 54.38
Gene sequence:
>1131_bases ATGCCTCCTTTAAAACAACATTTCAGGATACTGAATACTGACCCGGGATCGGCGGCACGGCTGGGTCTGCTGTCGACGGT TCATGGCGAAGTCCACACCCCGGCATTCATGCCCGTGGGAACGCAGGGAACGGTTAAAGCCCTGACCCCGGACACGGTGA AATCCCTGGGGGCGGAGATAATCCTCTGCAATACCTACCATCTTTATCTGAGACCCGGCCACCGGCTGATTGAGTCCCTG GGCGGACTGCATCGCTTCATGAACTGGCCGGGCCCTATCTTAACGGACAGCGGTGGCTTTCAGGTTTACAGTCTGGGAAA ACTGCGGAAAGTAACCCGGGAAGGGGTGATTTTTCAATCCCATATCGACGGCTCCCGGCATAAAATCACCCCGGAACTTG CCATTGAAATTCAGGAAGCCTTGAACACGGATATCATGATGTGTCTGGATGAATGCACCCCCTGGCCGGCCGGTTTTCAG GAAGCGGAATCTTCCCTTTCCCTGACGCTGTCCTGGGCCGAGCGAAGCCGGAAGGCCAGGACTAATTCTTCTTCCCAAGC CCTCTACGGAATCATTCAGGGAGGAATGTATCTGGAATTGAGAAGACGCGCCGTGGAAGCAATAACGGCTATGGATTTCG ACGGCTATGCCCTGGGAGGAGTCAGTGTGGGCGAACCCAAACCCCTGATGGAACAGATCGTCAGTGAAACGGCTCCCCTT CTTCCGGAGGATCGTCCTCATTATCTCATGGGTGTGGGAACGCCGGAGGATATCGTCCGGGCCGTGGACTGCGGAATCGA TCTGTTCGACTGCGTCATGCCCACCCGATGCGCCAGGCACGGTTTATTGTTTACAAATGCTGAAAAGGTTGTTATAAAAA ACGCCCGTTATCGGGAAGACAACGGGCCTCTGGACAGCGATTGCGATTGTTATACCTGCCGGAACTTCTCGCGGGCCTAC CTGAGGCATTTATATGTGGCCGGCGAAATCCTGGCCATGACCTTGAACACTCTTCACAACATCCGCTATTATATGCGCCT TATGGAGCAGATTCGGAGCGCCATAGGACGCGGTCAATACGCGGCTTTTAAAACCCGGTTTCTAAAAGACCGTCGAATGT CGGAAGCCTGA
Upstream 100 bases:
>100_bases GCGACGGCCATTCAGGAAGAATACCGCTTTTACAGTTACGGCGACTGCATGCTGATCATTTAGGCGGGCACGTTCCGAAA AGGCTTATCCGGATAAACTT
Downstream 100 bases:
>100_bases CTCCTGATCAGGGTATATTCATAATGTCATAATGGACACGATTGAAGGAGGATAACGCATTGACAGACTTAGCTTATGCC ATGGGAAGCGCTCCCGGAGG
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MPPLKQHFRILNTDPGSAARLGLLSTVHGEVHTPAFMPVGTQGTVKALTPDTVKSLGAEIILCNTYHLYLRPGHRLIESL GGLHRFMNWPGPILTDSGGFQVYSLGKLRKVTREGVIFQSHIDGSRHKITPELAIEIQEALNTDIMMCLDECTPWPAGFQ EAESSLSLTLSWAERSRKARTNSSSQALYGIIQGGMYLELRRRAVEAITAMDFDGYALGGVSVGEPKPLMEQIVSETAPL LPEDRPHYLMGVGTPEDIVRAVDCGIDLFDCVMPTRCARHGLLFTNAEKVVIKNARYREDNGPLDSDCDCYTCRNFSRAY LRHLYVAGEILAMTLNTLHNIRYYMRLMEQIRSAIGRGQYAAFKTRFLKDRRMSEA
Sequences:
>Translated_376_residues MPPLKQHFRILNTDPGSAARLGLLSTVHGEVHTPAFMPVGTQGTVKALTPDTVKSLGAEIILCNTYHLYLRPGHRLIESL GGLHRFMNWPGPILTDSGGFQVYSLGKLRKVTREGVIFQSHIDGSRHKITPELAIEIQEALNTDIMMCLDECTPWPAGFQ EAESSLSLTLSWAERSRKARTNSSSQALYGIIQGGMYLELRRRAVEAITAMDFDGYALGGVSVGEPKPLMEQIVSETAPL LPEDRPHYLMGVGTPEDIVRAVDCGIDLFDCVMPTRCARHGLLFTNAEKVVIKNARYREDNGPLDSDCDCYTCRNFSRAY LRHLYVAGEILAMTLNTLHNIRYYMRLMEQIRSAIGRGQYAAFKTRFLKDRRMSEA >Mature_375_residues PPLKQHFRILNTDPGSAARLGLLSTVHGEVHTPAFMPVGTQGTVKALTPDTVKSLGAEIILCNTYHLYLRPGHRLIESLG GLHRFMNWPGPILTDSGGFQVYSLGKLRKVTREGVIFQSHIDGSRHKITPELAIEIQEALNTDIMMCLDECTPWPAGFQE AESSLSLTLSWAERSRKARTNSSSQALYGIIQGGMYLELRRRAVEAITAMDFDGYALGGVSVGEPKPLMEQIVSETAPLL PEDRPHYLMGVGTPEDIVRAVDCGIDLFDCVMPTRCARHGLLFTNAEKVVIKNARYREDNGPLDSDCDCYTCRNFSRAYL RHLYVAGEILAMTLNTLHNIRYYMRLMEQIRSAIGRGQYAAFKTRFLKDRRMSEA
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=352, Percent_Identity=42.3295454545455, Blast_Score=287, Evalue=1e-77, Organism=Homo sapiens, GI13375872, Length=288, Percent_Identity=25, Blast_Score=102, Evalue=7e-22, Organism=Escherichia coli, GI1786607, Length=361, Percent_Identity=53.7396121883656, Blast_Score=393, Evalue=1e-111, Organism=Caenorhabditis elegans, GI17544680, Length=353, Percent_Identity=41.9263456090652, Blast_Score=275, Evalue=3e-74, Organism=Caenorhabditis elegans, GI25146502, Length=226, Percent_Identity=26.5486725663717, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI19920510, Length=368, Percent_Identity=42.9347826086957, Blast_Score=317, Evalue=1e-86, Organism=Drosophila melanogaster, GI21355311, Length=160, Percent_Identity=31.875, Blast_Score=82, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 42024; Mature: 41893
Theoretical pI: Translated: 7.77; Mature: 7.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPLKQHFRILNTDPGSAARLGLLSTVHGEVHTPAFMPVGTQGTVKALTPDTVKSLGAEI CCCHHHHCEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCEEECCHHHHHHCCCEE ILCNTYHLYLRPGHRLIESLGGLHRFMNWPGPILTDSGGFQVYSLGKLRKVTREGVIFQS EEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECHHHHHHHHCCCEEEE HIDGSRHKITPELAIEIQEALNTDIMMCLDECTPWPAGFQEAESSLSLTLSWAERSRKAR CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHCCCCEEEEEHHHHHHHHC TNSSSQALYGIIQGGMYLELRRRAVEAITAMDFDGYALGGVSVGEPKPLMEQIVSETAPL CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCC LPEDRPHYLMGVGTPEDIVRAVDCGIDLFDCVMPTRCARHGLLFTNAEKVVIKNARYRED CCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEEECCEECCC NGPLDSDCDCYTCRNFSRAYLRHLYVAGEILAMTLNTLHNIRYYMRLMEQIRSAIGRGQY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH AAFKTRFLKDRRMSEA HHHHHHHHHHHHCCCC >Mature Secondary Structure PPLKQHFRILNTDPGSAARLGLLSTVHGEVHTPAFMPVGTQGTVKALTPDTVKSLGAEI CCHHHHCEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCEEECCHHHHHHCCCEE ILCNTYHLYLRPGHRLIESLGGLHRFMNWPGPILTDSGGFQVYSLGKLRKVTREGVIFQS EEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECHHHHHHHHCCCEEEE HIDGSRHKITPELAIEIQEALNTDIMMCLDECTPWPAGFQEAESSLSLTLSWAERSRKAR CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHCCCCEEEEEHHHHHHHHC TNSSSQALYGIIQGGMYLELRRRAVEAITAMDFDGYALGGVSVGEPKPLMEQIVSETAPL CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCC LPEDRPHYLMGVGTPEDIVRAVDCGIDLFDCVMPTRCARHGLLFTNAEKVVIKNARYRED CCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEEECCEECCC NGPLDSDCDCYTCRNFSRAYLRHLYVAGEILAMTLNTLHNIRYYMRLMEQIRSAIGRGQY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH AAFKTRFLKDRRMSEA HHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]