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The map label for this gene is yfiO [C]

Identifier: 85860041

GI number: 85860041

Start: 2252934

End: 2253653

Strand: Direct

Name: yfiO [C]

Synonym: SYN_00044

Alternate gene names: 85860041

Gene position: 2252934-2253653 (Clockwise)

Preceding gene: 85860040

Following gene: 85860043

Centisome position: 70.86

GC content: 50.56

Gene sequence:

>720_bases
ATGAAATACAGAACACTTTGCGTCCGTTCCCTTATTGTTTTCTGCGCGGCCAGTCTACTTCTCTCACTACTGACCGGCTG
CGCCTGGTTTCGAAAGTCGGACATGACCCGGGCAACCCCGGAAGGTCTTTACCGGAGGGGTTACGAAGATTATCAGAACG
GACGCTATAAGAAGGCGATTGAGTCCTTTGAGCGGCTGCGCGACGAATATCCCATGAGTGAGCTGGCCATTCTGGCCAAG
GTGGGCATAGGTGACGCCCACTACAGCAATAAGGCCTACGCGGAAGCGGAAGCCGCCTATAATGACTTCGTCTACCTGCA
TCCCACGAACGAAAATCTGCCCTACGTGATGTATCAGATCGGGATGTGTCATTACAAGCAGATGTTGAGTATCGACCGCG
ACCAGACTGAAACCGTACGGGCGGCGAAAGAATTCGAAAAACTTCTGGCTCGGTTTCCCGACAGCAAATTTTCCCTCATG
GCGGAAAAAATGTTAAGGGAGTGTCGAGTTCGGATCGCCGAGCATGAATTCTATGTAGGGGAGTTCTATTTCAAACAGAA
GAAATATCAGGCCGCCCTCAAACGTTTTGAAACCATCAATAGAGAGTACGCCAACCTCGGACTGGATTACAAGGTTTCCG
CCTACATCCGGGAAACACAGAAGCGGATAGCGCAGGAAAAAGCCCGAAAGGAAGCCAGGGAAGCCAAAGAAAAGAAATAA

Upstream 100 bases:

>100_bases
GGATGGCAAGGTGATGGATACCCTGGTCGGGGTCGTCTCAAAGGAGCGGCTGGAAACGTTCGTCAATCAAAGTCTCTAAA
TCGCCGACAACTAATACCTC

Downstream 100 bases:

>100_bases
ATTCCTGAACAGAGAGTCGGTGACGGGAAAAACCGGAAAGAGCCGGGGCTCAGGAAACGATATCCGTTTTGAGTTTTTTG
ATCTTCAACAGGATTTCCTG

Product: ComL family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKYRTLCVRSLIVFCAASLLLSLLTGCAWFRKSDMTRATPEGLYRRGYEDYQNGRYKKAIESFERLRDEYPMSELAILAK
VGIGDAHYSNKAYAEAEAAYNDFVYLHPTNENLPYVMYQIGMCHYKQMLSIDRDQTETVRAAKEFEKLLARFPDSKFSLM
AEKMLRECRVRIAEHEFYVGEFYFKQKKYQAALKRFETINREYANLGLDYKVSAYIRETQKRIAQEKARKEAREAKEKK

Sequences:

>Translated_239_residues
MKYRTLCVRSLIVFCAASLLLSLLTGCAWFRKSDMTRATPEGLYRRGYEDYQNGRYKKAIESFERLRDEYPMSELAILAK
VGIGDAHYSNKAYAEAEAAYNDFVYLHPTNENLPYVMYQIGMCHYKQMLSIDRDQTETVRAAKEFEKLLARFPDSKFSLM
AEKMLRECRVRIAEHEFYVGEFYFKQKKYQAALKRFETINREYANLGLDYKVSAYIRETQKRIAQEKARKEAREAKEKK
>Mature_239_residues
MKYRTLCVRSLIVFCAASLLLSLLTGCAWFRKSDMTRATPEGLYRRGYEDYQNGRYKKAIESFERLRDEYPMSELAILAK
VGIGDAHYSNKAYAEAEAAYNDFVYLHPTNENLPYVMYQIGMCHYKQMLSIDRDQTETVRAAKEFEKLLARFPDSKFSLM
AEKMLRECRVRIAEHEFYVGEFYFKQKKYQAALKRFETINREYANLGLDYKVSAYIRETQKRIAQEKARKEAREAKEKK

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=202, Percent_Identity=28.2178217821782, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28211; Mature: 28211

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYRTLCVRSLIVFCAASLLLSLLTGCAWFRKSDMTRATPEGLYRRGYEDYQNGRYKKAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHCCHHHHHH
ESFERLRDEYPMSELAILAKVGIGDAHYSNKAYAEAEAAYNDFVYLHPTNENLPYVMYQI
HHHHHHHHHCCHHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHH
GMCHYKQMLSIDRDQTETVRAAKEFEKLLARFPDSKFSLMAEKMLRECRVRIAEHEFYVG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EFYFKQKKYQAALKRFETINREYANLGLDYKVSAYIRETQKRIAQEKARKEAREAKEKK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKYRTLCVRSLIVFCAASLLLSLLTGCAWFRKSDMTRATPEGLYRRGYEDYQNGRYKKAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHCCHHHHHH
ESFERLRDEYPMSELAILAKVGIGDAHYSNKAYAEAEAAYNDFVYLHPTNENLPYVMYQI
HHHHHHHHHCCHHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHH
GMCHYKQMLSIDRDQTETVRAAKEFEKLLARFPDSKFSLMAEKMLRECRVRIAEHEFYVG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EFYFKQKKYQAALKRFETINREYANLGLDYKVSAYIRETQKRIAQEKARKEAREAKEKK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]