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The map label for this gene is ihfA [H]

Identifier: 85859597

GI number: 85859597

Start: 1829972

End: 1830253

Strand: Direct

Name: ihfA [H]

Synonym: SYN_02019

Alternate gene names: 85859597

Gene position: 1829972-1830253 (Clockwise)

Preceding gene: 85859596

Following gene: 85859598

Centisome position: 57.56

GC content: 41.13

Gene sequence:

>282_bases
ATGCCACTGACCAAAAACGAAATGATGACCATGCTCTATAATCAGTTGAATATTTCCAGAAAGGAATGCGTTGACATCGT
AGAAAGCTTCTTCGAAATCATTAAATCGGAACTGGAAAAAGGTAATCCGGTTATGATCTCCGGATTCGGCAAATGGACCG
TAAGGCCCAAGAGAGAAAGGAAAGGCAGAAATCCTCAAACCGGTGAAGATTTGACCATTACGGCAAGAAAAGTCGTTACT
TTCAAAGCTTCCCCGAATCTGATCTCTTCTATTAACCCATAA

Upstream 100 bases:

>100_bases
GACGGACAGGATGAATTCACGATTTATCTTGCCTCAGTGGGTAAAAAATGATGATTATGTTCTTCAATATCGATAAATCT
GCAAGTTAAGGAGTGCCACA

Downstream 100 bases:

>100_bases
AAGATAATAAAAATACGGCTCTTCCAGAGCAGACTGAAAACCTTACAATCGGAAGCACAAACATGAAGAAGTCGCAACGC
GGTTCTTCGATCATCAGGGA

Product: DNA-binding protein HU

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MPLTKNEMMTMLYNQLNISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRERKGRNPQTGEDLTITARKVVT
FKASPNLISSINP

Sequences:

>Translated_93_residues
MPLTKNEMMTMLYNQLNISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRERKGRNPQTGEDLTITARKVVT
FKASPNLISSINP
>Mature_92_residues
PLTKNEMMTMLYNQLNISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRERKGRNPQTGEDLTITARKVVTF
KASPNLISSINP

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=48.3516483516484, Blast_Score=93, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10631; Mature: 10499

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTKNEMMTMLYNQLNISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRER
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCHHH
KGRNPQTGEDLTITARKVVTFKASPNLISSINP
CCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
PLTKNEMMTMLYNQLNISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRER
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCHHH
KGRNPQTGEDLTITARKVVTFKASPNLISSINP
CCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA