| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is yegE [C]
Identifier: 85858959
GI number: 85858959
Start: 1140086
End: 1141681
Strand: Direct
Name: yegE [C]
Synonym: SYN_00566
Alternate gene names: 85858959
Gene position: 1140086-1141681 (Clockwise)
Preceding gene: 85858958
Following gene: 85858961
Centisome position: 35.86
GC content: 50.88
Gene sequence:
>1596_bases ATGATCGCGACGTTCTGGCGACAGGTCTCGGTTATCCCGTCGTGCCCAGAGGGGATGAGGAACTCCGGTTCCAGATCTCC GCGGAGCATACCGAAAGAGACATCGGTTATCTGCTGGATGTTTTGTGAAAGAGAAAACTCGATGAGCGAGGAGTTCGAAA ACCGGGAACAATTGCTGGACGAGATTTCATCGCTGCGTCAGCGCGTTAAGGAACTTGAAGTATCCGTTGCATCGCATAAA CAGAGCGAGGAACGCTATCGTCGGCTTTATGATCGCATGCTTCATGATGAGGGCATGGATGGATATGCCGCGATCAATAT GGATGGTTATTTCCGAGTGTCCAATGCGGCCTTCATGAAGATGGTCGGATATACGGCTGAGGAACTGCGGGGAATGATCT ACCTGGATCTGACACCTGAGAAGTGGCGCGAGACGGAAAGAGTCATCATTCAGGAACAGGTCCTTTCCGAAAATTTTTCC CAGGTTTATGAAAAGGAGTTACGACGGAAGGATGGGTCCGTCTTCCCTGTCGAACTCCGCACTTATCTGATCAGAAGCCG GAACGGCCAGCCATCCGGAATGTGGGCATTCGTTCGGGACATTACAGTGCGCAAGCAATCGGAAAATATTCTGGTCGCTC AACGGGATTTGTCCCTCGCACTGGCCGGTACAAAGTCGCTCCAGGATACCCTTCAGCTCTGTCTCGATACCGCCATTCAA GCGTCGGGTTTTGATTCCGGCGGGATCTATATTTTGGATTCCAGGAAGAAGAGTCTTGATCTTGCCTGTGTCCGGAATCT TTCGGATGAGTTTGTCGACTCCATCAACCATGTTCCCGCCGATTCAGAGAGGGCTCGGGTTGTGATGGCGGGCAGCCCCT GCTATCTTGAAGGAGCGGATTGCGACGGGGTCCTGAAGCAGGAGCACTTCGTCAGAGAAGGAATAAAATCGTGTTCCATC ATCCCGATCAGCAGTCAGGAACGGATTATCGCCTGCCTGAATGTTGCGTCTCATGTGCTCGAAAAAATTCCACCTTACGC GCGCAACGCGCTGGAATCGATAGCGGGTCAGATTGGTCTTTGCATTCAGAAGGCTCAGGCCGAAGAAGAGTTGAGGGACA GCGAAAAAAAGTACAGACAACTGGTTGATTTTCTTCCAATAATTGTCTTCGAGTGTGATAAGCGGGGAAATATTACCTCC ACAAATCGAGCTGCATTTAAAGCCTTTGGGTATACTCAGGAGGATCTTGGCCCAGGGTTTAATGCCCTGCAGGTCATTGT CCCCGAGGAGAAGGAACGAGCACTGCACAATATTCAGAGGCGCATTAATGACGAAGATGTCGACACAATTGAATACACAG CCGTGAGGAAGGACGGTACCACCTTCCCAGTCCGGATTTTATCGGCGCCGATTATCAGGAATAACAAGGCAGTTGGTTTG AGAGGGGCCATCATCGATATGACCGAAATCAAACTGGCCCGGAAGGCACTGCAGGAAAGCGAAGAACGCTGGCAGTTTGC CTTGGAAGGATCAGGTGACGGTGTCTGGGACTGGAACAAACAAACCGGAGAGGTTTTTTATGGTTCATCCGACTAA
Upstream 100 bases:
>100_bases TTTCGGGATTGCGGCCGCGAAACCCTGGACGGCGAACACCCCATCGTTCCCCTCCTGATTCGGGATACCGCAAAAACCAG GGAACTGGTTCAGCGGCTTT
Downstream 100 bases:
>100_bases AGCGTACTTGGCTTCATGAATGGCCATGATTTTAAGTTTGAAGAATTCGATATCCCGGAACCCATAAGCCATCCGTTTCA TGGTTTTGATTTTGTTGTTT
Product: sensory transduction protein
Products: NA
Alternate protein names: PAS/PAC Sensor Protein; PAS/PAC Sensor Hybrid Histidine Kinase; Multi-Sensor Hybrid Histidine Kinase; PAS/PAC Sensor Signal Transduction Histidine Kinase; Signal Transduction Histidine Kinase; Sensory Transduction Histidine Kinase; Two-Component Hybrid Sensor And Regulator; PAS Sensor Protein; Two-Component Sensor Histidine Kinase Protein; PAS Fold Family; Signal Transduction Protein; Signaling Protein; Sensor Histidine Kinase; Signal Transduction Histidine Kinase Lyts; Histidine Kinase; Sensor Protein FixL; PAS/PAC And GAF Sensors-Containing Diguanylate Cyclase; Diguanylate Cyclase With PAS/PAC Sensor; Sensory Transduction Protein Kinase; HD-GYP Domain-Containing Protein; Two Component Sensor Histidine Kinase; Two-Component Sensor Protein; Iron Dependent Repressor; Multi-PAS Sensor; Multi-Sensor Protein; Histidine Kinase Sensor Protein; Sensory Protein; Two-Component Hybrid Sensor Kinase/Response Regulator; Sensory Transduction Protein; PAS Modulated; Hybrid Histidine Kinase
Number of amino acids: Translated: 531; Mature: 531
Protein sequence:
>531_residues MIATFWRQVSVIPSCPEGMRNSGSRSPRSIPKETSVICWMFCERENSMSEEFENREQLLDEISSLRQRVKELEVSVASHK QSEERYRRLYDRMLHDEGMDGYAAINMDGYFRVSNAAFMKMVGYTAEELRGMIYLDLTPEKWRETERVIIQEQVLSENFS QVYEKELRRKDGSVFPVELRTYLIRSRNGQPSGMWAFVRDITVRKQSENILVAQRDLSLALAGTKSLQDTLQLCLDTAIQ ASGFDSGGIYILDSRKKSLDLACVRNLSDEFVDSINHVPADSERARVVMAGSPCYLEGADCDGVLKQEHFVREGIKSCSI IPISSQERIIACLNVASHVLEKIPPYARNALESIAGQIGLCIQKAQAEEELRDSEKKYRQLVDFLPIIVFECDKRGNITS TNRAAFKAFGYTQEDLGPGFNALQVIVPEEKERALHNIQRRINDEDVDTIEYTAVRKDGTTFPVRILSAPIIRNNKAVGL RGAIIDMTEIKLARKALQESEERWQFALEGSGDGVWDWNKQTGEVFYGSSD
Sequences:
>Translated_531_residues MIATFWRQVSVIPSCPEGMRNSGSRSPRSIPKETSVICWMFCERENSMSEEFENREQLLDEISSLRQRVKELEVSVASHK QSEERYRRLYDRMLHDEGMDGYAAINMDGYFRVSNAAFMKMVGYTAEELRGMIYLDLTPEKWRETERVIIQEQVLSENFS QVYEKELRRKDGSVFPVELRTYLIRSRNGQPSGMWAFVRDITVRKQSENILVAQRDLSLALAGTKSLQDTLQLCLDTAIQ ASGFDSGGIYILDSRKKSLDLACVRNLSDEFVDSINHVPADSERARVVMAGSPCYLEGADCDGVLKQEHFVREGIKSCSI IPISSQERIIACLNVASHVLEKIPPYARNALESIAGQIGLCIQKAQAEEELRDSEKKYRQLVDFLPIIVFECDKRGNITS TNRAAFKAFGYTQEDLGPGFNALQVIVPEEKERALHNIQRRINDEDVDTIEYTAVRKDGTTFPVRILSAPIIRNNKAVGL RGAIIDMTEIKLARKALQESEERWQFALEGSGDGVWDWNKQTGEVFYGSSD >Mature_531_residues MIATFWRQVSVIPSCPEGMRNSGSRSPRSIPKETSVICWMFCERENSMSEEFENREQLLDEISSLRQRVKELEVSVASHK QSEERYRRLYDRMLHDEGMDGYAAINMDGYFRVSNAAFMKMVGYTAEELRGMIYLDLTPEKWRETERVIIQEQVLSENFS QVYEKELRRKDGSVFPVELRTYLIRSRNGQPSGMWAFVRDITVRKQSENILVAQRDLSLALAGTKSLQDTLQLCLDTAIQ ASGFDSGGIYILDSRKKSLDLACVRNLSDEFVDSINHVPADSERARVVMAGSPCYLEGADCDGVLKQEHFVREGIKSCSI IPISSQERIIACLNVASHVLEKIPPYARNALESIAGQIGLCIQKAQAEEELRDSEKKYRQLVDFLPIIVFECDKRGNITS TNRAAFKAFGYTQEDLGPGFNALQVIVPEEKERALHNIQRRINDEDVDTIEYTAVRKDGTTFPVRILSAPIIRNNKAVGL RGAIIDMTEIKLARKALQESEERWQFALEGSGDGVWDWNKQTGEVFYGSSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60309; Mature: 60309
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS50112 PAS ; PS50113 PAC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIATFWRQVSVIPSCPEGMRNSGSRSPRSIPKETSVICWMFCERENSMSEEFENREQLLD CCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH EISSLRQRVKELEVSVASHKQSEERYRRLYDRMLHDEGMDGYAAINMDGYFRVSNAAFMK HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCHHHHH MVGYTAEELRGMIYLDLTPEKWRETERVIIQEQVLSENFSQVYEKELRRKDGSVFPVELR HHCCCHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH TYLIRSRNGQPSGMWAFVRDITVRKQSENILVAQRDLSLALAGTKSLQDTLQLCLDTAIQ HHHHHCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHH ASGFDSGGIYILDSRKKSLDLACVRNLSDEFVDSINHVPADSERARVVMAGSPCYLEGAD HCCCCCCCEEEEECCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEECCCCEEECCC CDGVLKQEHFVREGIKSCSIIPISSQERIIACLNVASHVLEKIPPYARNALESIAGQIGL CCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH CIQKAQAEEELRDSEKKYRQLVDFLPIIVFECDKRGNITSTNRAAFKAFGYTQEDLGPGF HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHCCCCHHHHCCCC NALQVIVPEEKERALHNIQRRINDEDVDTIEYTAVRKDGTTFPVRILSAPIIRNNKAVGL CEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEE RGAIIDMTEIKLARKALQESEERWQFALEGSGDGVWDWNKQTGEVFYGSSD CEEEEHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEECCCC >Mature Secondary Structure MIATFWRQVSVIPSCPEGMRNSGSRSPRSIPKETSVICWMFCERENSMSEEFENREQLLD CCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH EISSLRQRVKELEVSVASHKQSEERYRRLYDRMLHDEGMDGYAAINMDGYFRVSNAAFMK HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCHHHHH MVGYTAEELRGMIYLDLTPEKWRETERVIIQEQVLSENFSQVYEKELRRKDGSVFPVELR HHCCCHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH TYLIRSRNGQPSGMWAFVRDITVRKQSENILVAQRDLSLALAGTKSLQDTLQLCLDTAIQ HHHHHCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHH ASGFDSGGIYILDSRKKSLDLACVRNLSDEFVDSINHVPADSERARVVMAGSPCYLEGAD HCCCCCCCEEEEECCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEECCCCEEECCC CDGVLKQEHFVREGIKSCSIIPISSQERIIACLNVASHVLEKIPPYARNALESIAGQIGL CCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH CIQKAQAEEELRDSEKKYRQLVDFLPIIVFECDKRGNITSTNRAAFKAFGYTQEDLGPGF HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHCCCCHHHHCCCC NALQVIVPEEKERALHNIQRRINDEDVDTIEYTAVRKDGTTFPVRILSAPIIRNNKAVGL CEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEE RGAIIDMTEIKLARKALQESEERWQFALEGSGDGVWDWNKQTGEVFYGSSD CEEEEHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA