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The map label for this gene is nirD [H]

Identifier: 85858426

GI number: 85858426

Start: 577375

End: 577848

Strand: Direct

Name: nirD [H]

Synonym: SYN_02265

Alternate gene names: 85858426

Gene position: 577375-577848 (Clockwise)

Preceding gene: 85858425

Following gene: 85858427

Centisome position: 18.16

GC content: 55.06

Gene sequence:

>474_bases
ATGGACGGGATCGATAAAAGAATTCTGAATATGCTTCAGACGGAATTTCCCGTGACGCCGGAGCCGTTCAGGGCGGTTGC
GGAAAGGTTGGGGATTTCTGAAGGCGAAGCGCTGACGCGCATTGCTAGGCTGAAGGACGAAGGGATAATCCGGCGGATCG
GCGCTGTGCTGGACAGCGGCAAACTGGGCTTTGTCAGCCGTCTCTGTGCCGCCTCCGTTCCCGGGGAGCAGGTTGACTCC
TTTGTCGAGTGCGTCAATGCCCTTGAAGGCGTAACACACAATTATGGAAGGAATCACGCCTGTAATATCTGGTTCACTCT
GATCGCCTCTTCGGAGGAAGATCTGGAGAAGACGATTGCGCGCCTTTCGGAAGACACGGGAATCGGCCCTGTTCAGATGT
TCCGGGCGGTTCGGACATTCAAGATCGACGCCCGGTTTCTCCTTGATGAAAACCTGCCTGAAGATCGGAAATGA

Upstream 100 bases:

>100_bases
AGAGCCGTTCTGCATTTACGAACCGGCGAGGAAGGCGGCCGCCTTGCCATCCCGAGGGGAAACGGAACCGGGGAGTCCCG
AATAGGCCGGACAGGTAAAC

Downstream 100 bases:

>100_bases
TCGGTTGGAGGGTGCGTTTCGAGATGGAATCGGAGAGAGAAAAGGGAGTTGATTCCAGGCGTTTAAAAGAGGGGGGGAGT
TTTTGTAGAACCTTGAAAAA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MDGIDKRILNMLQTEFPVTPEPFRAVAERLGISEGEALTRIARLKDEGIIRRIGAVLDSGKLGFVSRLCAASVPGEQVDS
FVECVNALEGVTHNYGRNHACNIWFTLIASSEEDLEKTIARLSEDTGIGPVQMFRAVRTFKIDARFLLDENLPEDRK

Sequences:

>Translated_157_residues
MDGIDKRILNMLQTEFPVTPEPFRAVAERLGISEGEALTRIARLKDEGIIRRIGAVLDSGKLGFVSRLCAASVPGEQVDS
FVECVNALEGVTHNYGRNHACNIWFTLIASSEEDLEKTIARLSEDTGIGPVQMFRAVRTFKIDARFLLDENLPEDRK
>Mature_157_residues
MDGIDKRILNMLQTEFPVTPEPFRAVAERLGISEGEALTRIARLKDEGIIRRIGAVLDSGKLGFVSRLCAASVPGEQVDS
FVECVNALEGVTHNYGRNHACNIWFTLIASSEEDLEKTIARLSEDTGIGPVQMFRAVRTFKIDARFLLDENLPEDRK

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17477; Mature: 17477

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGIDKRILNMLQTEFPVTPEPFRAVAERLGISEGEALTRIARLKDEGIIRRIGAVLDSG
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
KLGFVSRLCAASVPGEQVDSFVECVNALEGVTHNYGRNHACNIWFTLIASSEEDLEKTIA
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEECCCHHHHHHHHH
RLSEDTGIGPVQMFRAVRTFKIDARFLLDENLPEDRK
HHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCC
>Mature Secondary Structure
MDGIDKRILNMLQTEFPVTPEPFRAVAERLGISEGEALTRIARLKDEGIIRRIGAVLDSG
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
KLGFVSRLCAASVPGEQVDSFVECVNALEGVTHNYGRNHACNIWFTLIASSEEDLEKTIA
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEECCCHHHHHHHHH
RLSEDTGIGPVQMFRAVRTFKIDARFLLDENLPEDRK
HHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982003; 10984043 [H]