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The map label for this gene is hfq

Identifier: 85374079

GI number: 85374079

Start: 1301026

End: 1301553

Strand: Reverse

Name: hfq

Synonym: ELI_06260

Alternate gene names: 85374079

Gene position: 1301553-1301026 (Counterclockwise)

Preceding gene: 85374080

Following gene: 85374078

Centisome position: 42.64

GC content: 59.47

Gene sequence:

>528_bases
ATGTCCGCTGGAAACACCCTCTCCACGCGTCCGAAAGACGATAGCAAGGGCGGCAAGCAGCCGAACCTGCAGGACGCTTT
TCTCAACATGTTGCGGCGCAACAAGACCCCTGTGACCGTGTTTCTAGTCAAGGGCGTCAAGCTGCAAGGCATCGTGACAT
GGTTCGACAATTTCTCCATGCTGCTGCGCCGCGATGGCCAGTCGCAGCTGGTCTACAAGCATGCAATCAGCACGATCATG
CCGGGTCAGCCGATCGACGCCAGCCAGTTCGCCAGTCAGGACGGCAACAAGAAGCAGCGGTTGCTGCAGGATGTTTTCCT
CAGCCGCGTGCGCGATGCCGGGGTGCAGGTGACGATGTTCCTCATCAACGGCGTCATGCTGCAGGGCCGGATCGGTGCGT
ATGATCTCTTCTGCGTGCTGCTGGAGCGTGACGGCTATGTCCAGCTCGCTTACAAACACGCCGTTTCGACGGTGCAGCCT
GCCAGTGCGGTCGACCTGACCGACTGGGAAGAGGACGAAGAAGACTGA

Upstream 100 bases:

>100_bases
ATCTTGCGCACATAATTAAAGCCAGATTTCGGACGGGCGTCTCCGGGCGGTCGATCCTGATTGCGGGCTGGTGGGCCCGC
CAACAAAAACGGAGACAATA

Downstream 100 bases:

>100_bases
GCTTCGATGATGATCTGATGGGCGAAGTCTCGCGCGGGGCGCGGGCGCTCGTCGTGTGCCCGGACATCAGGCGCGAGAGC
TACGATCTCGATCCGGACGC

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSAGNTLSTRPKDDSKGGKQPNLQDAFLNMLRRNKTPVTVFLVKGVKLQGIVTWFDNFSMLLRRDGQSQLVYKHAISTIM
PGQPIDASQFASQDGNKKQRLLQDVFLSRVRDAGVQVTMFLINGVMLQGRIGAYDLFCVLLERDGYVQLAYKHAVSTVQP
ASAVDLTDWEEDEED

Sequences:

>Translated_175_residues
MSAGNTLSTRPKDDSKGGKQPNLQDAFLNMLRRNKTPVTVFLVKGVKLQGIVTWFDNFSMLLRRDGQSQLVYKHAISTIM
PGQPIDASQFASQDGNKKQRLLQDVFLSRVRDAGVQVTMFLINGVMLQGRIGAYDLFCVLLERDGYVQLAYKHAVSTVQP
ASAVDLTDWEEDEED
>Mature_174_residues
SAGNTLSTRPKDDSKGGKQPNLQDAFLNMLRRNKTPVTVFLVKGVKLQGIVTWFDNFSMLLRRDGQSQLVYKHAISTIMP
GQPIDASQFASQDGNKKQRLLQDVFLSRVRDAGVQVTMFLINGVMLQGRIGAYDLFCVLLERDGYVQLAYKHAVSTVQPA
SAVDLTDWEEDEED

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=69, Percent_Identity=52.1739130434783, Blast_Score=80, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 19583; Mature: 19451

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGNTLSTRPKDDSKGGKQPNLQDAFLNMLRRNKTPVTVFLVKGVKLQGIVTWFDNFSM
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEHHHHHHHHHHH
LLRRDGQSQLVYKHAISTIMPGQPIDASQFASQDGNKKQRLLQDVFLSRVRDAGVQVTMF
HHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEH
LINGVMLQGRIGAYDLFCVLLERDGYVQLAYKHAVSTVQPASAVDLTDWEEDEED
HHCCCCEECCCCHHEEEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAGNTLSTRPKDDSKGGKQPNLQDAFLNMLRRNKTPVTVFLVKGVKLQGIVTWFDNFSM
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEHHHHHHHHHHH
LLRRDGQSQLVYKHAISTIMPGQPIDASQFASQDGNKKQRLLQDVFLSRVRDAGVQVTMF
HHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEH
LINGVMLQGRIGAYDLFCVLLERDGYVQLAYKHAVSTVQPASAVDLTDWEEDEED
HHCCCCEECCCCHHEEEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA