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The map label for this gene is glxA [H]

Identifier: 85060402

GI number: 85060402

Start: 4162015

End: 4163004

Strand: Reverse

Name: glxA [H]

Synonym: SG2424

Alternate gene names: 85060402

Gene position: 4163004-4162015 (Counterclockwise)

Preceding gene: 85060403

Following gene: 85060400

Centisome position: 99.8

GC content: 52.93

Gene sequence:

>990_bases
ATGCCAGCTCGTATTCCACCCCAAAACATTGTCATTCTCTGCATTCCGCCGATCGACCTTTTTAATGTTGTGGGGCCGAT
GGAGGCATTCCGGTTGGCAAACCAGCTGGCGAACAAAAAATCCTCTTATCAAATAGAACTGGTTTCTACCAGGGCGGATC
TGGCTATCGAGAGCGAGACCGGCATTAACCTGCAAGCCAACTACTCGCTGTCCGATGACAGATGGCAAACAAGCAAAATC
GACACCCTGATTATCACCTCGAATATCCTATTATCCAGCGGTAATCCTCCAGAGGCGATAAAATGGATCAATACGCAAAC
GAAAAACGCGCGCCGCATATGCTCGCTGTGCGGCGGCATTTTCGCTCTGGCGCAGACGGGAATGCTCAACGGTAAGCGGG
TAACCACCCATTGGCGCGTTGTGGAGCAATTCGCTCAGCAGCATCCGCAAATCAAGGTCGACGATCAGCCCGTTTGGGTG
AAAGACGGCAACATTTATACTTCGGCGGGAATGTCCGCCAGTATTGATATGGCTCTTAGCCTTATTGCCGAGGATCGCGG
GGATGCGCTGGCGGCTGAAGTGTCGCGCGAAATGGTGCTTTTTTTGCGACGCCCCAGCCATCAACCTCAGCAAAGCTTGT
CCCTGCTGGCGCAAAGCAGCAACAACCGTAATCTGAAGGCGCTGCAGCCCTGGCTTCAGGAGCATCTGACACAAGAGTTG
AGCGTTGAGATACTGGCCGATCAGTTGGCGATGAGCCGCAGCACGTTAATTCGCATCTTTAAAACCGAGCTGAACACCAC
ACCGGCGAAATATGTAGAGAATGTGCGCTTGGAAACCGCGCGACGCTTTTTGCTTATGACGTCGATGAATCTCGACAGGA
TCGCCGCCCGCTGCGGTTTCACCAGCGCCGATGTGATGCGGCGGGTCTTTATGCGCAATTTAGGCATTAACCCGCTGCAT
TACCGTCAACAGTTTGGCAGCAGCGAATAA

Upstream 100 bases:

>100_bases
GCGGAATGACCCAATAAAAAATGTCATTTTACCGATTGTAAGTATCAAATTGAACCGCTCTTTGTTCAGAAATGGCTAAA
AAGGTAGAGGGAAGTTAAGC

Downstream 100 bases:

>100_bases
GTCGTCGTTCCGATTCGCCTGTACGTAGTGCTTCTCACTGGCGAGGCCGTTAGCCGATGCGATTATTACTGCCGCCGCCG
TGGTCTTAACGCGTAAAATA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MPARIPPQNIVILCIPPIDLFNVVGPMEAFRLANQLANKKSSYQIELVSTRADLAIESETGINLQANYSLSDDRWQTSKI
DTLIITSNILLSSGNPPEAIKWINTQTKNARRICSLCGGIFALAQTGMLNGKRVTTHWRVVEQFAQQHPQIKVDDQPVWV
KDGNIYTSAGMSASIDMALSLIAEDRGDALAAEVSREMVLFLRRPSHQPQQSLSLLAQSSNNRNLKALQPWLQEHLTQEL
SVEILADQLAMSRSTLIRIFKTELNTTPAKYVENVRLETARRFLLMTSMNLDRIAARCGFTSADVMRRVFMRNLGINPLH
YRQQFGSSE

Sequences:

>Translated_329_residues
MPARIPPQNIVILCIPPIDLFNVVGPMEAFRLANQLANKKSSYQIELVSTRADLAIESETGINLQANYSLSDDRWQTSKI
DTLIITSNILLSSGNPPEAIKWINTQTKNARRICSLCGGIFALAQTGMLNGKRVTTHWRVVEQFAQQHPQIKVDDQPVWV
KDGNIYTSAGMSASIDMALSLIAEDRGDALAAEVSREMVLFLRRPSHQPQQSLSLLAQSSNNRNLKALQPWLQEHLTQEL
SVEILADQLAMSRSTLIRIFKTELNTTPAKYVENVRLETARRFLLMTSMNLDRIAARCGFTSADVMRRVFMRNLGINPLH
YRQQFGSSE
>Mature_328_residues
PARIPPQNIVILCIPPIDLFNVVGPMEAFRLANQLANKKSSYQIELVSTRADLAIESETGINLQANYSLSDDRWQTSKID
TLIITSNILLSSGNPPEAIKWINTQTKNARRICSLCGGIFALAQTGMLNGKRVTTHWRVVEQFAQQHPQIKVDDQPVWVK
DGNIYTSAGMSASIDMALSLIAEDRGDALAAEVSREMVLFLRRPSHQPQQSLSLLAQSSNNRNLKALQPWLQEHLTQELS
VEILADQLAMSRSTLIRIFKTELNTTPAKYVENVRLETARRFLLMTSMNLDRIAARCGFTSADVMRRVFMRNLGINPLHY
RQQFGSSE

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=134, Percent_Identity=32.089552238806, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36964; Mature: 36833

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARIPPQNIVILCIPPIDLFNVVGPMEAFRLANQLANKKSSYQIELVSTRADLAIESET
CCCCCCCCCEEEEEECCHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCC
GINLQANYSLSDDRWQTSKIDTLIITSNILLSSGNPPEAIKWINTQTKNARRICSLCGGI
CCEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHH
FALAQTGMLNGKRVTTHWRVVEQFAQQHPQIKVDDQPVWVKDGNIYTSAGMSASIDMALS
HHHHHCCCCCCCEEHHHHHHHHHHHHHCCCEEECCCEEEEECCCEEECCCCCHHHHHHHH
LIAEDRGDALAAEVSREMVLFLRRPSHQPQQSLSLLAQSSNNRNLKALQPWLQEHLTQEL
HHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SVEILADQLAMSRSTLIRIFKTELNTTPAKYVENVRLETARRFLLMTSMNLDRIAARCGF
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
TSADVMRRVFMRNLGINPLHYRQQFGSSE
CHHHHHHHHHHHHCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
PARIPPQNIVILCIPPIDLFNVVGPMEAFRLANQLANKKSSYQIELVSTRADLAIESET
CCCCCCCCEEEEEECCHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCC
GINLQANYSLSDDRWQTSKIDTLIITSNILLSSGNPPEAIKWINTQTKNARRICSLCGGI
CCEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHH
FALAQTGMLNGKRVTTHWRVVEQFAQQHPQIKVDDQPVWVKDGNIYTSAGMSASIDMALS
HHHHHCCCCCCCEEHHHHHHHHHHHHHCCCEEECCCEEEEECCCEEECCCCCHHHHHHHH
LIAEDRGDALAAEVSREMVLFLRRPSHQPQQSLSLLAQSSNNRNLKALQPWLQEHLTQEL
HHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SVEILADQLAMSRSTLIRIFKTELNTTPAKYVENVRLETARRFLLMTSMNLDRIAARCGF
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
TSADVMRRVFMRNLGINPLHYRQQFGSSE
CHHHHHHHHHHHHCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]