Click here to switch to the map view.

The map label for this gene is sorA [H]

Identifier: 85060403

GI number: 85060403

Start: 4163491

End: 4164234

Strand: Reverse

Name: sorA [H]

Synonym: SG2425

Alternate gene names: 85060403

Gene position: 4164234-4163491 (Counterclockwise)

Preceding gene: 85060404

Following gene: 85060402

Centisome position: 99.83

GC content: 50.81

Gene sequence:

>744_bases
TTGACTATGTGGGAAGTCGCGATTTTTACAGGGCTTTGGTATTGGATATGTAAAACTGATGTCGGTTATGCCATTACCCA
CGCCATCCGCCAGCCATTATTTGCGTCGGTGCTGATTGGCTTGATAATGGGTGACGTCACACAGGCGGTCATTATCAGTG
CGGCGATTCAAATTTTGTACATCGGTCTGGTAGCGGCGGGCTCCAACCTGCCGGCCGATGACTGCCTGGCCGGCCTTATC
GCCATACCACTCGCTTTGAATACCGGTCTTTCGCCGACGCTGGCTATCGCTATAGCGGTGCCGGTCGGGGTAATGGGCGT
TTTTCTTGGCCAATTAAGGAAAACCGTCAACGCCGTCTTCGTGCATATGGCGGATAAATACGCCGAAGAAGGCAATGTAC
GCCAGATTAAGTTGTGCACCATCATCTGGCCGACCCTGCTTGGCTTTTTCATCCGTTTCCCGGTCCCCTTCCTGGCCAAT
CTTTACGGGAAAGACAGTATCAATGCATTTCTGAACAGCGTACCGAAATGGCTGATTCATGGTTTCAGCGTCGTGGGCGG
CCTGCTCCCTGCGCTCGGCTTTGCCTTGACCATTTTTGTTATTGGCAAAAAGGCGTTGCTACCCTGGTTTTTCATCGGCT
ATTTCCTGGTGCAATTCAGCGGTATTCCCGTTTTCGGCGCGGCAATTTTCGGCCTCAGTGCAGTATTGCTCATTTCTTAT
TATCAAAATAAAAAAGAAGCGTGA

Upstream 100 bases:

>100_bases
ATCTCAAATTTATTCAGTCGCAGGGAACCGCCGTTTACTTCCAGGTCACCCCGTAGGAAGTCAAATTAACGTTGGATAAG
GTCATTACGCGTCTGGAGGG

Downstream 100 bases:

>100_bases
GGATCTTACCTATGTACCCTAAAGAGATAACAGAAAAGCAACTGTCTTGAACGATAAAATTATAGAGAAACGTGATGGTA
CGATTCATCCTACTCTTCTG

Product: putative PTS system IIC component

Products: NA

Alternate protein names: EIIC-Sor; PTS system sorbose-specific EIIC component [H]

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTMWEVAIFTGLWYWICKTDVGYAITHAIRQPLFASVLIGLIMGDVTQAVIISAAIQILYIGLVAAGSNLPADDCLAGLI
AIPLALNTGLSPTLAIAIAVPVGVMGVFLGQLRKTVNAVFVHMADKYAEEGNVRQIKLCTIIWPTLLGFFIRFPVPFLAN
LYGKDSINAFLNSVPKWLIHGFSVVGGLLPALGFALTIFVIGKKALLPWFFIGYFLVQFSGIPVFGAAIFGLSAVLLISY
YQNKKEA

Sequences:

>Translated_247_residues
MTMWEVAIFTGLWYWICKTDVGYAITHAIRQPLFASVLIGLIMGDVTQAVIISAAIQILYIGLVAAGSNLPADDCLAGLI
AIPLALNTGLSPTLAIAIAVPVGVMGVFLGQLRKTVNAVFVHMADKYAEEGNVRQIKLCTIIWPTLLGFFIRFPVPFLAN
LYGKDSINAFLNSVPKWLIHGFSVVGGLLPALGFALTIFVIGKKALLPWFFIGYFLVQFSGIPVFGAAIFGLSAVLLISY
YQNKKEA
>Mature_246_residues
TMWEVAIFTGLWYWICKTDVGYAITHAIRQPLFASVLIGLIMGDVTQAVIISAAIQILYIGLVAAGSNLPADDCLAGLIA
IPLALNTGLSPTLAIAIAVPVGVMGVFLGQLRKTVNAVFVHMADKYAEEGNVRQIKLCTIIWPTLLGFFIRFPVPFLANL
YGKDSINAFLNSVPKWLIHGFSVVGGLLPALGFALTIFVIGKKALLPWFFIGYFLVQFSGIPVFGAAIFGLSAVLLISYY
QNKKEA

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=190, Percent_Identity=28.4210526315789, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788121, Length=213, Percent_Identity=25.8215962441315, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 26698; Mature: 26567

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCC
>Mature Secondary Structure 
TMWEVAIFTGLWYWICKTDVGYAITHAIRQPLFASVLIGLIMGDVTQAVIISAAIQILY
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLVAAGSNLPADDCLAGLIAIPLALNTGLSPTLAIAIAVPVGVMGVFLGQLRKTVNAVF
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHMADKYAEEGNVRQIKLCTIIWPTLLGFFIRFPVPFLANLYGKDSINAFLNSVPKWLIH
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHH
GFSVVGGLLPALGFALTIFVIGKKALLPWFFIGYFLVQFSGIPVFGAAIFGLSAVLLISY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
YQNKKEA
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]