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The map label for this gene is yeaM [H]

Identifier: 85059249

GI number: 85059249

Start: 2137664

End: 2138470

Strand: Reverse

Name: yeaM [H]

Synonym: SG1271

Alternate gene names: 85059249

Gene position: 2138470-2137664 (Counterclockwise)

Preceding gene: 85059250

Following gene: 85059247

Centisome position: 51.27

GC content: 56.88

Gene sequence:

>807_bases
ATGGCCATGCTGCCGGCACCTTTAACCCATTATGAACCCGATCGGGATCGCAATCTGGCGACGGCGATGCGTCTGAATGT
CGTTCAGAGCGCGATGGAGACCCCTTTTTATCAGCATCGCAAAGGGCAATTAATCATGGCACTGCATGGCGGTATCACCT
GCGAACTCACCGATGCGCTCTTGATGGTACCGCCCCATTGCGCAGTGTGGATCCCGGCTGATACGCCGCACAGTAATCAC
GCTACCGTCAATGCCCGCTTTTGCTTCGTGTTCGTGGAGCCCATCTTTCCGGGGTTACTGGCGCGAAGCTGTACGTTGTT
TATTTCACCGCTGCTGCAACAGCTGATATTGCATCTGGCCGAGCTGCCGGGGGATTATGCGCTCGATTTACCGACCGGAC
GCCTTGCCGTGGTGATGCTGGAACAATTGGCCAACATGCCGGAGGAGAACCTCTCATTGCCCTTTTCTTCCCATCCGCGC
ATTCGACGCATCACCGATACATTAAACCATTCACCCGCCGAGCGCCGCACGCTTCCCGCATGGGCTAGTCTGGTCGGCAT
GAATGAGCGATCGCTGGCCAGGCTGTTTATCAAAGAAACCGGCATGACTTTTGGCTGCCGGCGACAGCGATTACAGCTAA
TTATCTCCATCCGGGAACTGGCGTGCAGCGGGTGGCGGAAAATCTGGGCTATGACTCTCCCTCGGCCTTTATCACCATGT
TCAAAAAAGCGTTGGGGAAACCGCCCCGGCAGTATTTTGCCGACGATCGGCAGCACGACACGGCGGCTTCCCGGCGGCGG
CGGTTAA

Upstream 100 bases:

>100_bases
TATTAGCCAAAAACGTGACTCCTGCTGTCATGAATGCCCGTCTACTTTACCGGCTTGCGCGGTGAAAAAATTGAGATAAA
ATGACGGAAAATTGTGATAA

Downstream 100 bases:

>100_bases
ACGCTGCACGTTTGAAAGGCACGTTTATCGACATGGGCGCAGACGGGTAGGTCAGGCGCCATCGTGGACCGGTTCGCTAC
GGCGCAATGAGGATGGCGCT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MAMLPAPLTHYEPDRDRNLATAMRLNVVQSAMETPFYQHRKGQLIMALHGGITCELTDALLMVPPHCAVWIPADTPHSNH
ATVNARFCFVFVEPIFPGLLARSCTLFISPLLQQLILHLAELPGDYALDLPTGRLAVVMLEQLANMPEENLSLPFSSHPR
IRRITDTLNHSPAERRTLPAWASLVGMNERSLARLFIKETGMTFGCRRQRLQLIISIRELACSGWRKIWAMTLPRPLSPC
SKKRWGNRPGSILPTIGSTTRRLPGGGG

Sequences:

>Translated_268_residues
MAMLPAPLTHYEPDRDRNLATAMRLNVVQSAMETPFYQHRKGQLIMALHGGITCELTDALLMVPPHCAVWIPADTPHSNH
ATVNARFCFVFVEPIFPGLLARSCTLFISPLLQQLILHLAELPGDYALDLPTGRLAVVMLEQLANMPEENLSLPFSSHPR
IRRITDTLNHSPAERRTLPAWASLVGMNERSLARLFIKETGMTFGCRRQRLQLIISIRELACSGWRKIWAMTLPRPLSPC
SKKRWGNRPGSILPTIGSTTRRLPGGGG
>Mature_267_residues
AMLPAPLTHYEPDRDRNLATAMRLNVVQSAMETPFYQHRKGQLIMALHGGITCELTDALLMVPPHCAVWIPADTPHSNHA
TVNARFCFVFVEPIFPGLLARSCTLFISPLLQQLILHLAELPGDYALDLPTGRLAVVMLEQLANMPEENLSLPFSSHPRI
RRITDTLNHSPAERRTLPAWASLVGMNERSLARLFIKETGMTFGCRRQRLQLIISIRELACSGWRKIWAMTLPRPLSPCS
KKRWGNRPGSILPTIGSTTRRLPGGGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=213, Percent_Identity=45.5399061032864, Blast_Score=175, Evalue=2e-45,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29913; Mature: 29781

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMLPAPLTHYEPDRDRNLATAMRLNVVQSAMETPFYQHRKGQLIMALHGGITCELTDAL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCEEEEECCEE
LMVPPHCAVWIPADTPHSNHATVNARFCFVFVEPIFPGLLARSCTLFISPLLQQLILHLA
EEECCCCEEEEECCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELPGDYALDLPTGRLAVVMLEQLANMPEENLSLPFSSHPRIRRITDTLNHSPAERRTLPA
HCCCCEEEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHCCCCHHHHCCHH
WASLVGMNERSLARLFIKETGMTFGCRRQRLQLIISIRELACSGWRKIWAMTLPRPLSPC
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
SKKRWGNRPGSILPTIGSTTRRLPGGGG
HHHHCCCCCCCEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
AMLPAPLTHYEPDRDRNLATAMRLNVVQSAMETPFYQHRKGQLIMALHGGITCELTDAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCEEEEECCEE
LMVPPHCAVWIPADTPHSNHATVNARFCFVFVEPIFPGLLARSCTLFISPLLQQLILHLA
EEECCCCEEEEECCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELPGDYALDLPTGRLAVVMLEQLANMPEENLSLPFSSHPRIRRITDTLNHSPAERRTLPA
HCCCCEEEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHCCCCHHHHCCHH
WASLVGMNERSLARLFIKETGMTFGCRRQRLQLIISIRELACSGWRKIWAMTLPRPLSPC
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
SKKRWGNRPGSILPTIGSTTRRLPGGGG
HHHHCCCCCCCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]