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The map label for this gene is prtR [H]

Identifier: 85058914

GI number: 85058914

Start: 1530949

End: 1531668

Strand: Reverse

Name: prtR [H]

Synonym: SG0936

Alternate gene names: 85058914

Gene position: 1531668-1530949 (Counterclockwise)

Preceding gene: 85058915

Following gene: 85058913

Centisome position: 36.72

GC content: 40.83

Gene sequence:

>720_bases
ATGGATATAAAATACATAAGACGCAAAAATTTGCGAGATCAGCAATTAAAAGCCATAAAGGCAGGTCTGAGTAAAGCCGA
CTTCGCGGAAAAATGCGGAACCTCAGCCTCTACGATCAGCCAAATATTAGGAGACAAGGCTGGTCGTAATCTTGGTGATG
ATCTCGCTAGAAAAATCGAAAAGAACCTAGGCCTAAAGCATGGGTGGCTGGATCTTCAGCACCATGAAACACAAAAGAAT
TCCGAGGTGCATGAAGCTCAGATTATTGGTGGTATAATTCCTTGGGACTCAAAAACTTCATTGTACGGTGATGAGGTGGA
AGTTCCCTTTTTGAAAGAGGTAAAAATTTCAGCTGGTAGCGGCAGCTTGTTCCAAGAGGATCACAACGGATATAAATTAC
GGTTTGCCAAGTCAACGTTAAGGCGATTAAATGTTCAGCCAGAAAACGCAGTATGTGTTGAGGTTATCGGGAATAGCATG
GAGCCTGTTTTACCTGATGGCTCAACAGTCGGAGTTGATTTGGGAAACAAAATCATCAAGGATGGAAAGATGTATGCTAT
TGATTATGGTGACTTTCTTCGTGTAAAAGTACTCTATCTTATGCCAAAAGGTAAAATCAGAATTCGTAGTTATAATCAAG
ATGAATATGACGATGAAGAATGCGACGCTACCGAAGTAACCGTGATCGGGAAAGTTTTTTGGTCATCAGTGCTATATTAA

Upstream 100 bases:

>100_bases
TAATGAGCCAACAAACATTAGCACCAAGCTAAACTCAAGGCAAGCTAAATTTAGCGCCTTGGATATTTATCTATGCGCTA
AAAAATGAGAAAATTTAGGC

Downstream 100 bases:

>100_bases
ACTTATTTTAATGATTTCTAAAAGGCCGACATTATGTTGGTTTTTTATGCCCACCATTAAATCTTTTCTTAAATTTTTCT
TTCCTCTCCATACATTTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: Pyocin repressor protein [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MDIKYIRRKNLRDQQLKAIKAGLSKADFAEKCGTSASTISQILGDKAGRNLGDDLARKIEKNLGLKHGWLDLQHHETQKN
SEVHEAQIIGGIIPWDSKTSLYGDEVEVPFLKEVKISAGSGSLFQEDHNGYKLRFAKSTLRRLNVQPENAVCVEVIGNSM
EPVLPDGSTVGVDLGNKIIKDGKMYAIDYGDFLRVKVLYLMPKGKIRIRSYNQDEYDDEECDATEVTVIGKVFWSSVLY

Sequences:

>Translated_239_residues
MDIKYIRRKNLRDQQLKAIKAGLSKADFAEKCGTSASTISQILGDKAGRNLGDDLARKIEKNLGLKHGWLDLQHHETQKN
SEVHEAQIIGGIIPWDSKTSLYGDEVEVPFLKEVKISAGSGSLFQEDHNGYKLRFAKSTLRRLNVQPENAVCVEVIGNSM
EPVLPDGSTVGVDLGNKIIKDGKMYAIDYGDFLRVKVLYLMPKGKIRIRSYNQDEYDDEECDATEVTVIGKVFWSSVLY
>Mature_239_residues
MDIKYIRRKNLRDQQLKAIKAGLSKADFAEKCGTSASTISQILGDKAGRNLGDDLARKIEKNLGLKHGWLDLQHHETQKN
SEVHEAQIIGGIIPWDSKTSLYGDEVEVPFLKEVKISAGSGSLFQEDHNGYKLRFAKSTLRRLNVQPENAVCVEVIGNSM
EPVLPDGSTVGVDLGNKIIKDGKMYAIDYGDFLRVKVLYLMPKGKIRIRSYNQDEYDDEECDATEVTVIGKVFWSSVLY

Specific function: Represses the promoter activity of the prtN gene [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 26780; Mature: 26780

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKYIRRKNLRDQQLKAIKAGLSKADFAEKCGTSASTISQILGDKAGRNLGDDLARKIE
CCCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
KNLGLKHGWLDLQHHETQKNSEVHEAQIIGGIIPWDSKTSLYGDEVEVPFLKEVKISAGS
HHCCCCCCEEECHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEEECCC
GSLFQEDHNGYKLRFAKSTLRRLNVQPENAVCVEVIGNSMEPVLPDGSTVGVDLGNKIIK
CCCCCCCCCCEEEEEHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHC
DGKMYAIDYGDFLRVKVLYLMPKGKIRIRSYNQDEYDDEECDATEVTVIGKVFWSSVLY
CCCEEEEECCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIKYIRRKNLRDQQLKAIKAGLSKADFAEKCGTSASTISQILGDKAGRNLGDDLARKIE
CCCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
KNLGLKHGWLDLQHHETQKNSEVHEAQIIGGIIPWDSKTSLYGDEVEVPFLKEVKISAGS
HHCCCCCCEEECHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEEECCC
GSLFQEDHNGYKLRFAKSTLRRLNVQPENAVCVEVIGNSMEPVLPDGSTVGVDLGNKIIK
CCCCCCCCCCEEEEEHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHC
DGKMYAIDYGDFLRVKVLYLMPKGKIRIRSYNQDEYDDEECDATEVTVIGKVFWSSVLY
CCCEEEEECCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444788; 10984043 [H]