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The map label for this gene is rdgA [H]

Identifier: 85058915

GI number: 85058915

Start: 1532996

End: 1533706

Strand: Reverse

Name: rdgA [H]

Synonym: SG0937

Alternate gene names: 85058915

Gene position: 1533706-1532996 (Counterclockwise)

Preceding gene: 85058922

Following gene: 85058914

Centisome position: 36.77

GC content: 39.66

Gene sequence:

>711_bases
ATGAATAATATTACCGAACGATTAAAGCATGTGATGGCGCAGGAAGGCTTAAATCAGCGAGCCTTTGCTGAAAAATTAAA
CGTATCTCCACAAACTCTACATAACTGGTTGAAAAGAAATGCCATAAGCCGAGAGTCAGCTCAGAAATTAAGCACTCTAT
TTGGATACTCTCTAGATTGGTTACTCAACGGGAAAGGAGCTACTAAAGCTGCAAGTAACAATAATTCTGAAGTGCCACCA
GAAGATGAATGGGGCCGTATCGGCTCATGGGACCGAAAAACACCTTTGAACAATGATGAGGTAGAGATCCCGTTCTATAA
GGATATAGAACTAGCCGCTGGTGGCGGTTGTTTTGAAAATGTTGATTACAACAGTTTTTTATTAAGATTTTCAAAATCAA
CATTAAGAAGAGTGGGAGCTGATTCTTCAGGGCATGGCGTCATATGCTTCACAACCCATGGAAATAGCATGGAGCCGTTC
ATCCCTGATGGGACTTGTGTTGCAATTGATTGCAATAATAAACATGTTCATGACGGTGATGTGTATGCAATAAACATCAA
TGGATTAAAGCGAATCAAACAACTATACATGCGCCCTAAGGGAAAAATTGTAGTACGTAGCTTTAATCGTTTAGAGTACC
CTGATGAAGAATTTGATGAGCAAGAAGTAGATATTATTGGCCGTTTATTTTGGACTTCTCGCCTTTGGTAA

Upstream 100 bases:

>100_bases
CCAAGTTTATATCACCAACACCAATCCGTCAACACTATGGTGATTGATAAAATCAACTAAAAGTTTACTCTCTACTTGCA
GAGATGCGGAGAACCTAGCT

Downstream 100 bases:

>100_bases
GCAACTTACATTTCTCTCACTAATTTCCATAGTTTTCTATCTCGTCACAATATGAGCCACATCAGAAGCAAATGTGGCTC
CTACCTTCACGCATCTTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MNNITERLKHVMAQEGLNQRAFAEKLNVSPQTLHNWLKRNAISRESAQKLSTLFGYSLDWLLNGKGATKAASNNNSEVPP
EDEWGRIGSWDRKTPLNNDEVEIPFYKDIELAAGGGCFENVDYNSFLLRFSKSTLRRVGADSSGHGVICFTTHGNSMEPF
IPDGTCVAIDCNNKHVHDGDVYAININGLKRIKQLYMRPKGKIVVRSFNRLEYPDEEFDEQEVDIIGRLFWTSRLW

Sequences:

>Translated_236_residues
MNNITERLKHVMAQEGLNQRAFAEKLNVSPQTLHNWLKRNAISRESAQKLSTLFGYSLDWLLNGKGATKAASNNNSEVPP
EDEWGRIGSWDRKTPLNNDEVEIPFYKDIELAAGGGCFENVDYNSFLLRFSKSTLRRVGADSSGHGVICFTTHGNSMEPF
IPDGTCVAIDCNNKHVHDGDVYAININGLKRIKQLYMRPKGKIVVRSFNRLEYPDEEFDEQEVDIIGRLFWTSRLW
>Mature_236_residues
MNNITERLKHVMAQEGLNQRAFAEKLNVSPQTLHNWLKRNAISRESAQKLSTLFGYSLDWLLNGKGATKAASNNNSEVPP
EDEWGRIGSWDRKTPLNNDEVEIPFYKDIELAAGGGCFENVDYNSFLLRFSKSTLRRVGADSSGHGVICFTTHGNSMEPF
IPDGTCVAIDCNNKHVHDGDVYAININGLKRIKQLYMRPKGKIVVRSFNRLEYPDEEFDEQEVDIIGRLFWTSRLW

Specific function: Regulates pectin lyase production in response to DNA damage [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 26853; Mature: 26853

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNITERLKHVMAQEGLNQRAFAEKLNVSPQTLHNWLKRNAISRESAQKLSTLFGYSLDW
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEE
LLNGKGATKAASNNNSEVPPEDEWGRIGSWDRKTPLNNDEVEIPFYKDIELAAGGGCFEN
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEECCEEEECCCCCCCC
VDYNSFLLRFSKSTLRRVGADSSGHGVICFTTHGNSMEPFIPDGTCVAIDCNNKHVHDGD
CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEECCCC
VYAININGLKRIKQLYMRPKGKIVVRSFNRLEYPDEEFDEQEVDIIGRLFWTSRLW
EEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNITERLKHVMAQEGLNQRAFAEKLNVSPQTLHNWLKRNAISRESAQKLSTLFGYSLDW
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEE
LLNGKGATKAASNNNSEVPPEDEWGRIGSWDRKTPLNNDEVEIPFYKDIELAAGGGCFEN
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEECCEEEECCCCCCCC
VDYNSFLLRFSKSTLRRVGADSSGHGVICFTTHGNSMEPFIPDGTCVAIDCNNKHVHDGD
CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEECCCC
VYAININGLKRIKQLYMRPKGKIVVRSFNRLEYPDEEFDEQEVDIIGRLFWTSRLW
EEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7715460 [H]