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The map label for this gene is hofC [H]

Identifier: 85058440

GI number: 85058440

Start: 797923

End: 799158

Strand: Reverse

Name: hofC [H]

Synonym: SG0462

Alternate gene names: 85058440

Gene position: 799158-797923 (Counterclockwise)

Preceding gene: 85058441

Following gene: 85058439

Centisome position: 19.16

GC content: 63.92

Gene sequence:

>1236_bases
GTGGAGGATCCGGTTGAGCTGCCGTTGACTGGTATTAACCAATGTCAGGTCAATTCCCGGGCGCGGCTGGATTTTCCGCT
GCTGCTGCGGGCGCTGCTGCGTCAGGACCCGGATGTGTTGATGGTCGGCGAGATTCGCGATCCGGAAACCGCTGCTGTAA
CGCTGAACGCTGCCCGCACCGGCTATCTGGTCCTTTCAACGCTACACACGCTGTGCGCCGACTCGGTCTGGAAGCGGCGC
AGGCATGGCGCTGGCGCAGCAGGGCACAACCTCGTTCGCCGAACTCAGGCGCGTTTTGGGTCATTCGCCATGAACGGCCT
CTGGCTCTGGCGTTGGCAGGGTCTGTGCGCCGAAGGCCGATTCTGCCGGGGAAAGATGATAGGCCGTAGCCGCCGCGACT
GCGGCATGCGTTTAGTGGCGCAGGGCTACCAGCCCTTTCGCCTGCGTATTCACTGCTGGCTGCCGGCACGCTATTGGCAA
CGCCGGGCGCTGATTACTCTTACCGACCGGCTCGCCTCGCTACTGCATGCCGGCCTCCCGCTGCGGGAAAGCCTGACGCT
GCTGGCCGCCGAATACCCGCGTGCAGGCTGGCGCTGTCTACTGGCACAGATCGGCGCGGATATCGAACGGGGACTGACGC
TGTCGCGGGCCTGCGCCGCCTGGCCGCAGGTCTTTCCGCCGGTGTGGTGCGCCATGTTCGCCCTGGGCGAGCTTACCGGC
AGACTGGACAGCTGCTGCGCCGAGCTGGCGCAAAGCGAAGCACGGCTATGGCGTATTAGGCAGCAGGTAATGCGGTCGCT
GCTGGTCAGTTTGGGCGCGGTTGGCGACGGTTGTGCCATTATCATCCGCGCTGGCGTCACCCGCCTGCGCACCGCCGCAC
TGTGGCTGCCGCTGGCGGGTCCCCTGTTGCGTCATCACACGCTTCATCAGTTGTTTCAAACGCTGTCGATGACCCATCGC
GCCGGCATCGCTCTCGATCGGGCGCTGGCGCCGACGTCGCTGTTTCCGGCGCATTGCCACTGGTTGATTCGCAGCGGCGG
ACTCACCGGCACGCTGGACGAGATTTTGTCGCAGCTGGCACGGTTACACGGCGAGCAGGCGCGGCAAAATGCCGAACAGC
TGGCGCAGCTGGCTGAACCTGCTCTGCTGTTGCTCACGGGCGCCATGGTGTGCGGATTGGTGGTCATGCTTTATTTACCG
CTGCTGCAGTTAGAAGAGGTCTTTAGCCAGTTTTAA

Upstream 100 bases:

>100_bases
CTGTATGGAGAAAAAACGGTACTGCGTCTATTACGCTGCTCGCCACAGCGCCTGACGATTAAAAGATTAGGTATGCCGGC
GTCCGCTCAATATTTGCAGC

Downstream 100 bases:

>100_bases
GCGACTACGGCACACCCGCCGCGCGCGGTTGCAGGCCGAAGGATGCGCTGGTTGGGGGCGCCGGCGTCACCTCTATTTGC
AGGGCCGGGAGAAGCTCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MEDPVELPLTGINQCQVNSRARLDFPLLLRALLRQDPDVLMVGEIRDPETAAVTLNAARTGYLVLSTLHTLCADSVWKRR
RHGAGAAGHNLVRRTQARFGSFAMNGLWLWRWQGLCAEGRFCRGKMIGRSRRDCGMRLVAQGYQPFRLRIHCWLPARYWQ
RRALITLTDRLASLLHAGLPLRESLTLLAAEYPRAGWRCLLAQIGADIERGLTLSRACAAWPQVFPPVWCAMFALGELTG
RLDSCCAELAQSEARLWRIRQQVMRSLLVSLGAVGDGCAIIIRAGVTRLRTAALWLPLAGPLLRHHTLHQLFQTLSMTHR
AGIALDRALAPTSLFPAHCHWLIRSGGLTGTLDEILSQLARLHGEQARQNAEQLAQLAEPALLLLTGAMVCGLVVMLYLP
LLQLEEVFSQF

Sequences:

>Translated_411_residues
MEDPVELPLTGINQCQVNSRARLDFPLLLRALLRQDPDVLMVGEIRDPETAAVTLNAARTGYLVLSTLHTLCADSVWKRR
RHGAGAAGHNLVRRTQARFGSFAMNGLWLWRWQGLCAEGRFCRGKMIGRSRRDCGMRLVAQGYQPFRLRIHCWLPARYWQ
RRALITLTDRLASLLHAGLPLRESLTLLAAEYPRAGWRCLLAQIGADIERGLTLSRACAAWPQVFPPVWCAMFALGELTG
RLDSCCAELAQSEARLWRIRQQVMRSLLVSLGAVGDGCAIIIRAGVTRLRTAALWLPLAGPLLRHHTLHQLFQTLSMTHR
AGIALDRALAPTSLFPAHCHWLIRSGGLTGTLDEILSQLARLHGEQARQNAEQLAQLAEPALLLLTGAMVCGLVVMLYLP
LLQLEEVFSQF
>Mature_411_residues
MEDPVELPLTGINQCQVNSRARLDFPLLLRALLRQDPDVLMVGEIRDPETAAVTLNAARTGYLVLSTLHTLCADSVWKRR
RHGAGAAGHNLVRRTQARFGSFAMNGLWLWRWQGLCAEGRFCRGKMIGRSRRDCGMRLVAQGYQPFRLRIHCWLPARYWQ
RRALITLTDRLASLLHAGLPLRESLTLLAAEYPRAGWRCLLAQIGADIERGLTLSRACAAWPQVFPPVWCAMFALGELTG
RLDSCCAELAQSEARLWRIRQQVMRSLLVSLGAVGDGCAIIIRAGVTRLRTAALWLPLAGPLLRHHTLHQLFQTLSMTHR
AGIALDRALAPTSLFPAHCHWLIRSGGLTGTLDEILSQLARLHGEQARQNAEQLAQLAEPALLLLTGAMVCGLVVMLYLP
LLQLEEVFSQF

Specific function: Unknown

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1786295, Length=159, Percent_Identity=36.4779874213836, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786296, Length=70, Percent_Identity=65.7142857142857, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789723, Length=105, Percent_Identity=51.4285714285714, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI87082188, Length=83, Percent_Identity=45.7831325301205, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45801; Mature: 45801

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDPVELPLTGINQCQVNSRARLDFPLLLRALLRQDPDVLMVGEIRDPETAAVTLNAART
CCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCC
GYLVLSTLHTLCADSVWKRRRHGAGAAGHNLVRRTQARFGSFAMNGLWLWRWQGLCAEGR
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
FCRGKMIGRSRRDCGMRLVAQGYQPFRLRIHCWLPARYWQRRALITLTDRLASLLHAGLP
CHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC
LRESLTLLAAEYPRAGWRCLLAQIGADIERGLTLSRACAAWPQVFPPVWCAMFALGELTG
HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH
RLDSCCAELAQSEARLWRIRQQVMRSLLVSLGAVGDGCAIIIRAGVTRLRTAALWLPLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PLLRHHTLHQLFQTLSMTHRAGIALDRALAPTSLFPAHCHWLIRSGGLTGTLDEILSQLA
HHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
RLHGEQARQNAEQLAQLAEPALLLLTGAMVCGLVVMLYLPLLQLEEVFSQF
HHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEDPVELPLTGINQCQVNSRARLDFPLLLRALLRQDPDVLMVGEIRDPETAAVTLNAART
CCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCC
GYLVLSTLHTLCADSVWKRRRHGAGAAGHNLVRRTQARFGSFAMNGLWLWRWQGLCAEGR
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
FCRGKMIGRSRRDCGMRLVAQGYQPFRLRIHCWLPARYWQRRALITLTDRLASLLHAGLP
CHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC
LRESLTLLAAEYPRAGWRCLLAQIGADIERGLTLSRACAAWPQVFPPVWCAMFALGELTG
HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH
RLDSCCAELAQSEARLWRIRQQVMRSLLVSLGAVGDGCAIIIRAGVTRLRTAALWLPLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PLLRHHTLHQLFQTLSMTHRAGIALDRALAPTSLFPAHCHWLIRSGGLTGTLDEILSQLA
HHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
RLHGEQARQNAEQLAQLAEPALLLLTGAMVCGLVVMLYLPLLQLEEVFSQF
HHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503; 2904262 [H]