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The map label for this gene is ppdD [H]

Identifier: 85058441

GI number: 85058441

Start: 799621

End: 800037

Strand: Reverse

Name: ppdD [H]

Synonym: SG0463

Alternate gene names: 85058441

Gene position: 800037-799621 (Counterclockwise)

Preceding gene: 85058442

Following gene: 85058440

Centisome position: 19.18

GC content: 60.67

Gene sequence:

>417_bases
ATGCATCGTCAGCGCGGATTTACCCTCATGGAGCTAATGGTGGTGATCGCCATCATCCCTATTCTTAGCGCAATTGCGCT
GCCCGACTATCAACGTTATCTGGATCGCGCGGCGCTGACCGATATGCTACTCATCGCCAGCCCCTTCCGTCTGGCGGTGG
AGCTGTGCGCCATGCAGCAGGGCGACATCGATAGCTGCAATGCCGGTCAGCTGGATATTCCGGCCAGCCATCGTTCCCGT
TATGTCAGCAGCGTCAGCGTGCGTCAGGATGTGATAAGTCTTACCGGCCGCCAAACCCTGGCGGGGCTGACGCTGGTGAT
GACGCCCGAAACACAGGGCGACGGTCTGCTCTGGCAGCGACACCGCGGCCGACGGCCATCTTGCCGCTCCGTGCGAAGCG
TTATTCCAGAGCGCTGA

Upstream 100 bases:

>100_bases
GTAGCGCCGAATCCGTCTGCCACTTTTTCTTTCCGCCGCTATCTGGGCGTCTGCCGGGCCGCTAGGGTGAAGGGGTTTTC
GTTCACCCTAGCGGCCAGAC

Downstream 100 bases:

>100_bases
ACACTAGGGTGCGTAATGCTCAACCGTACGCATGCCGAGGCGCGCTGGCCGGTACTCCTCTGCACGACGATATACCGGTA
ACCGGCACGCTGGATCTATT

Product: putative prelipin peptidase dependent protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MHRQRGFTLMELMVVIAIIPILSAIALPDYQRYLDRAALTDMLLIASPFRLAVELCAMQQGDIDSCNAGQLDIPASHRSR
YVSSVSVRQDVISLTGRQTLAGLTLVMTPETQGDGLLWQRHRGRRPSCRSVRSVIPER

Sequences:

>Translated_138_residues
MHRQRGFTLMELMVVIAIIPILSAIALPDYQRYLDRAALTDMLLIASPFRLAVELCAMQQGDIDSCNAGQLDIPASHRSR
YVSSVSVRQDVISLTGRQTLAGLTLVMTPETQGDGLLWQRHRGRRPSCRSVRSVIPER
>Mature_138_residues
MHRQRGFTLMELMVVIAIIPILSAIALPDYQRYLDRAALTDMLLIASPFRLAVELCAMQQGDIDSCNAGQLDIPASHRSR
YVSSVSVRQDVISLTGRQTLAGLTLVMTPETQGDGLLWQRHRGRRPSCRSVRSVIPER

Specific function: Not yet known [H]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

Organism=Escherichia coli, GI1786297, Length=109, Percent_Identity=58.7155963302752, Blast_Score=136, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 15417; Mature: 15417

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRQRGFTLMELMVVIAIIPILSAIALPDYQRYLDRAALTDMLLIASPFRLAVELCAMQQ
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GDIDSCNAGQLDIPASHRSRYVSSVSVRQDVISLTGRQTLAGLTLVMTPETQGDGLLWQR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEECCCCCCCCCEEHH
HRGRRPSCRSVRSVIPER
HCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MHRQRGFTLMELMVVIAIIPILSAIALPDYQRYLDRAALTDMLLIASPFRLAVELCAMQQ
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GDIDSCNAGQLDIPASHRSRYVSSVSVRQDVISLTGRQTLAGLTLVMTPETQGDGLLWQR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEECCCCCCCCCEEHH
HRGRRPSCRSVRSVIPER
HCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]