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The map label for this gene is sodC2 [H]

Identifier: 84625880

GI number: 84625880

Start: 4773982

End: 4774461

Strand: Reverse

Name: sodC2 [H]

Synonym: XOO_4223

Alternate gene names: 84625880

Gene position: 4774461-4773982 (Counterclockwise)

Preceding gene: 84625881

Following gene: 84625879

Centisome position: 96.64

GC content: 69.17

Gene sequence:

>480_bases
GTGCAACAGGCCGAAGCGGTGCTGGCCTCGGCCTCGGGCAGCTTGGTCAGCGGCCGGGTGGTGCTGGTGCCTGCATTGCA
GGGCATCCGTCTCACCGGCACCATCGGCGGGCTGCGTCCGGGCGGCGTGTCGGGATTTCATGTGCACGAACGCGGCGATT
GCAGCGCGGCCGATGCGAGCAGTGCCGGCGCGCATTTCAATCCGAGCGGTACGCCGCACGGGCGTGCCGGGAGCGGTCCG
CACAATCTGGGCGACATGGACAATCTGCGTGCCGACGCCGAAGGGGTAGTGCATCTGGACATGATTCTGTCGGGCATCAG
CCTGGGCGACGGCGCGCCGAGCGACGTGGTCGGCAGGTCGCTGATCGTGCATGCCGACGCCGACGACTATCGCAGCCAGC
CCAGCGGCAATGCCGGCGTGCGTCTGGCCTGCGGCGTCATTCGTGTCGCCAAACGGGGCACGCCCCCTTCGCAGCCCTGA

Upstream 100 bases:

>100_bases
CGTTGCCCTCACCGCGCTGGCGCTGGCCGCCTGCAGCAGCACGCCAGCGCCGCCGAAGGCGCCTCCACCGCCGGCCGCAC
GCGTGGTGCCCTCTCGCCCG

Downstream 100 bases:

>100_bases
GTCAGGGCGTCAATGGCTGCAACTGCGGCCCTTCTTCAGGAGTACTCCATCCGAATTCTTCCGCCGCCCCCTGTTTCTGG
CCACTGCTCTGGTGCTGACC

Product: superoxide dismutase like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MQQAEAVLASASGSLVSGRVVLVPALQGIRLTGTIGGLRPGGVSGFHVHERGDCSAADASSAGAHFNPSGTPHGRAGSGP
HNLGDMDNLRADAEGVVHLDMILSGISLGDGAPSDVVGRSLIVHADADDYRSQPSGNAGVRLACGVIRVAKRGTPPSQP

Sequences:

>Translated_159_residues
MQQAEAVLASASGSLVSGRVVLVPALQGIRLTGTIGGLRPGGVSGFHVHERGDCSAADASSAGAHFNPSGTPHGRAGSGP
HNLGDMDNLRADAEGVVHLDMILSGISLGDGAPSDVVGRSLIVHADADDYRSQPSGNAGVRLACGVIRVAKRGTPPSQP
>Mature_159_residues
MQQAEAVLASASGSLVSGRVVLVPALQGIRLTGTIGGLRPGGVSGFHVHERGDCSAADASSAGAHFNPSGTPHGRAGSGP
HNLGDMDNLRADAEGVVHLDMILSGISLGDGAPSDVVGRSLIVHADADDYRSQPSGNAGVRLACGVIRVAKRGTPPSQP

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=130, Percent_Identity=43.8461538461538, Blast_Score=87, Evalue=6e-18,
Organism=Homo sapiens, GI4826665, Length=123, Percent_Identity=40.650406504065, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71981876, Length=154, Percent_Identity=38.961038961039, Blast_Score=89, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71981879, Length=154, Percent_Identity=38.961038961039, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17537871, Length=125, Percent_Identity=41.6, Blast_Score=78, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17554806, Length=125, Percent_Identity=36, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322564, Length=155, Percent_Identity=40, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17136496, Length=129, Percent_Identity=41.0852713178295, Blast_Score=83, Evalue=8e-17,
Organism=Drosophila melanogaster, GI281363087, Length=153, Percent_Identity=33.9869281045752, Blast_Score=73, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24652342, Length=153, Percent_Identity=33.9869281045752, Blast_Score=73, Evalue=7e-14,
Organism=Drosophila melanogaster, GI85725006, Length=127, Percent_Identity=34.6456692913386, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI45551081, Length=127, Percent_Identity=34.6456692913386, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24652737, Length=127, Percent_Identity=34.6456692913386, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI116007680, Length=127, Percent_Identity=34.6456692913386, Blast_Score=70, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 15902; Mature: 15902

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQAEAVLASASGSLVSGRVVLVPALQGIRLTGTIGGLRPGGVSGFHVHERGDCSAADAS
CCCHHHHHHCCCCCEECCCEEEEECCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCC
SAGAHFNPSGTPHGRAGSGPHNLGDMDNLRADAEGVVHLDMILSGISLGDGAPSDVVGRS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCHHHCCCE
LIVHADADDYRSQPSGNAGVRLACGVIRVAKRGTPPSQP
EEEEECCHHHHCCCCCCCCEEEHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQQAEAVLASASGSLVSGRVVLVPALQGIRLTGTIGGLRPGGVSGFHVHERGDCSAADAS
CCCHHHHHHCCCCCEECCCEEEEECCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCC
SAGAHFNPSGTPHGRAGSGPHNLGDMDNLRADAEGVVHLDMILSGISLGDGAPSDVVGRS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCHHHCCCE
LIVHADADDYRSQPSGNAGVRLACGVIRVAKRGTPPSQP
EEEEECCHHHHCCCCCCCCEEEHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]