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The map label for this gene is sodC2 [H]

Identifier: 84625879

GI number: 84625879

Start: 4773279

End: 4773782

Strand: Reverse

Name: sodC2 [H]

Synonym: XOO_4222

Alternate gene names: 84625879

Gene position: 4773782-4773279 (Counterclockwise)

Preceding gene: 84625880

Following gene: 84625874

Centisome position: 96.63

GC content: 62.7

Gene sequence:

>504_bases
ATGGTCACCGAAGCGGCGGCCACTACCACCGCAACCGCCGAGCTTAAGCCGACCAAGGGGAATGACGTCAAAGGCACGGT
GACCTTCAAAACTGTCGATGGCGCATTGCGTGTCACCGGCCAGCTGAGCGGCCTCAAGCCCAACACCGAGCACGGCTTCC
ATATTCACGAAAAGGGCGATTGCAGCGCACCGGACGGCAGCAGCGCCGGCGGCCACTTCAACCCGTCCCAGTCCGATCAC
GGCAACGTCAGCGCCGAACCGCATCACGGCGGCGACATGCTCAACATCAAGTCCGATGCGCAGGGCAACGTCACAATCGA
CGGCCCGGTGTCCAGCAACGTCAATCTCGCTAAGGCCAACCAGTTCGATATCGCCGGCCACGCGGTGATCGTGCATGCCG
ATGCGGACGATTACAAAACCCAGCCCACCGGCAACGCTGGCGGCCGTCTGGCCTGTGGCGTGATCACCACCGACAACGCG
CAGGCGGCGACACGTTACTCATAA

Upstream 100 bases:

>100_bases
CGCCTGCAAGCGCGACGAGCCGGCACCGGCCGACCCGGCACCCGCCCCGCAGGCCAGCACGCCGGCCGAAGCGGCGCACG
GCGGCGAACATGCCGCCTCC

Downstream 100 bases:

>100_bases
GTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGAT
CATGCACCCGATCGGCCAGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGDCSAPDGSSAGGHFNPSQSDH
GNVSAEPHHGGDMLNIKSDAQGNVTIDGPVSSNVNLAKANQFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNA
QAATRYS

Sequences:

>Translated_167_residues
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGDCSAPDGSSAGGHFNPSQSDH
GNVSAEPHHGGDMLNIKSDAQGNVTIDGPVSSNVNLAKANQFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNA
QAATRYS
>Mature_167_residues
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGDCSAPDGSSAGGHFNPSQSDH
GNVSAEPHHGGDMLNIKSDAQGNVTIDGPVSSNVNLAKANQFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNA
QAATRYS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=143, Percent_Identity=39.1608391608392, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI4826665, Length=140, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787934, Length=142, Percent_Identity=32.3943661971831, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17554806, Length=142, Percent_Identity=40.1408450704225, Blast_Score=88, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71981876, Length=161, Percent_Identity=35.4037267080745, Blast_Score=74, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71981879, Length=148, Percent_Identity=37.1621621621622, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17537871, Length=149, Percent_Identity=38.255033557047, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322564, Length=167, Percent_Identity=37.7245508982036, Blast_Score=77, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007680, Length=164, Percent_Identity=39.6341463414634, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI85725006, Length=142, Percent_Identity=42.2535211267606, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI45551081, Length=142, Percent_Identity=42.2535211267606, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24652737, Length=142, Percent_Identity=42.2535211267606, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17136496, Length=145, Percent_Identity=40, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281363087, Length=154, Percent_Identity=37.6623376623377, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24652342, Length=154, Percent_Identity=37.6623376623377, Blast_Score=77, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17075; Mature: 17075

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGD
CCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCEEEECCCC
CSAPDGSSAGGHFNPSQSDHGNVSAEPHHGGDMLNIKSDAQGNVTIDGPVSSNVNLAKAN
CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCEEECCCCCCCEEEEECC
QFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNAQAATRYS
EEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEECCC
>Mature Secondary Structure
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGD
CCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCEEEECCCC
CSAPDGSSAGGHFNPSQSDHGNVSAEPHHGGDMLNIKSDAQGNVTIDGPVSSNVNLAKAN
CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCEEECCCCCCCEEEEECC
QFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNAQAATRYS
EEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]