| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is ptrB [C]
Identifier: 84625777
GI number: 84625777
Start: 4644330
End: 4646414
Strand: Reverse
Name: ptrB [C]
Synonym: XOO_4120
Alternate gene names: 84625777
Gene position: 4646414-4644330 (Counterclockwise)
Preceding gene: 84625778
Following gene: 84625775
Centisome position: 94.05
GC content: 62.88
Gene sequence:
>2085_bases ATGCAACGCCTGCTTCTTGTTTCCAGCATGCTGCTCGCGCTATCTGCCTGCAGCGACAAAACCGCGCCCGCATCCAAGAA CGCTGCAACGCCTACCCCAGCGACGGCAGCACCCGCTGCGCCTCCCGAACTGATCACCCGCGATGCGTTGTTCGGCAACC CCGAGCGTGCCAATGTCAGCATCAGCCCGGACGGCAAGTACCTCAGCTGGGTGGCGCCGCTGGAGGGCGTCCTCAATGTG TGGGTTGCGCCGGTGGATGCGCCCGATCAGGCCCGTGCGATCACCAAGGACACCGCACGCGGCATTCGCAATTACTTTTG GACCTATCAACCCAATACCTTGCTGTATCTGCGCGACAACGGCGGCGATGAAGATTTCCACCTGTTTTCAGTCAATTTGA CTGACGGCAGCAGCAAGGATCTCACCCCGTTCAATAAGACCAATGCCGAGGTGTATCGGGTTAGCGCGCAGCATCCCGAA TCCATCATGGTCGGCATGAACGACCGCGATGCCAAGTGGCACGATTTGTATCGCGTGGACCTGGCTTCCGGCACGCGGAC GTTGGTGCAGAAGAACACCGAGCGCCTGGATGCGTACCTGCTCGATGGCGACTACCAGCTGCGCTACGCTACGCGTGCCA CCGACGATGCCGGCAGAGAATTGCTGGTGCCAGATGGCAAACGCTGGAAGAGCGTGGACCGCATCCCGTTCGAGGATGTC ACCAACACCGCGCCGGACGGCCTGACCGAGGACGGCAAGACGCTGTACATGCAGGATTCGCGCAACCGCGATACCGCAGC GCTGTATGCCATCGACACCGACAGCAACGCACGCACGCTGCTGTTCGAAAGCCCACGCGCCGATGTCGGCAACACCTTGA ACGACCCCAAGACCGGCGTGGTGCAGGCAGTGTCCACCGACTACCTGCGCGAAGAGTGGAAGCCGCTGGATAACGGCATT GCCGCAGATTTGCAAAAACTCAAATCGCTCGGCAGCGGCGACGCCAACGTTGCCGCACGCACGCTCGACGATCGCATCTG GATCGTTGGCTATTCCGCTGCCGAAACGCCGCTGACCTACTACCGCTACGATCGCGCCAATGGCGGCAAGCTGACCAAGC TGTTCTCCGCACGGCCCGCACTGGATGGCAAACCGCTGGTACCGATGTGGCCGCAGGAGCTGACCGCACGCGACGGTCTC AAGCTGGTCAGCTACCTCACCCTGCCCGCCGAAGCCGACGCCAACCACGACGGCAAGGCCGACAAGCCGGTGCCGTTGGT GCTGTTCGTGCACGGCGGCCCGTGGGCGCGCGACAGCTACGGTTACGGCCCGTACGAACAATGGCTTGCCAACCGCGGCT ATGCAGTGCTGTCGGTGAACTTCCGTGGTTCCACCGGCTTCGGCAAGGCCTTCACCAACGCCGGCAACGGCGAATGGGCC GGCAAGATGCATGACGACCTGCTCGACGCGGTGCAATGGGCGGTCAAGCAGGGCGTCACCCAACCCGACGACGTCGCCAT CATGGGCGGCAGCTATGGCGGCTATGCCACCCTCGTCGGCATGACCTTCACCCCGGACGCTTTCAAATGCGGCGTGGATA TCGTGGGCCCGGCCAATCTCAACACCTTGCTCGGCACCGTCCCGCCGTACTGGGCCAGCTTCTACAAGCAGCTGACCCGT CGCATGGGCGACCCCGCCACTGAGGCCGGCAGGCAGTGGCTGACCGAACGCTCTCCGCTCAGCCACGTCGACAAGATCAG CAAACCGCTGTTGATCGGCCAGGGCGCCAACGACCCTCGCGTCAAACAGGCTGAGAGCGACCAGATCGTCAACGCGATGA AGGCCAAAAACATTCCGGTCACCTACGTGCTCTTTCCCGATGAAGGCCACGGCTTCCGCCGCCCGGAAAACAGCAAGGCG TTCAACGCCGTGACCGAAAGCTTCCTGAGCCAATGCCTGGGCGGCCGCGTGCAACCGATCGGTGCGGACCTGGAAGGCTC CAGCATCACCGCCCCGGAAGGCGCCGACAAGATCAACGGCCTGCCCGATGCCTTGAAGACGCATACGCAGGCGATTCGGA AGTAG
Upstream 100 bases:
>100_bases GCGACGCATGGCTGCGTGACCAACGGCACGTTCGCTTGTCCGTGGGCTGCCGCTAACGTGGCACATCGGCCGGCTTGGCC GCAGTGCCACCGGAGGTCTC
Downstream 100 bases:
>100_bases GCGACCCATGCCGGGCATGACTCGCCGTTACGGCGAGTCATGCCGCTTGTGATGTGTACGCCGTGCCTAGGAAGCACTCG TGGCGGTTCATCTACCGAAG
Product: dipeptidyl aminopeptidase
Products: NA
Alternate protein names: AARE; Acyl-peptide hydrolase; APH; Acylaminoacyl-peptidase [H]
Number of amino acids: Translated: 694; Mature: 694
Protein sequence:
>694_residues MQRLLLVSSMLLALSACSDKTAPASKNAATPTPATAAPAAPPELITRDALFGNPERANVSISPDGKYLSWVAPLEGVLNV WVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDNGGDEDFHLFSVNLTDGSSKDLTPFNKTNAEVYRVSAQHPE SIMVGMNDRDAKWHDLYRVDLASGTRTLVQKNTERLDAYLLDGDYQLRYATRATDDAGRELLVPDGKRWKSVDRIPFEDV TNTAPDGLTEDGKTLYMQDSRNRDTAALYAIDTDSNARTLLFESPRADVGNTLNDPKTGVVQAVSTDYLREEWKPLDNGI AADLQKLKSLGSGDANVAARTLDDRIWIVGYSAAETPLTYYRYDRANGGKLTKLFSARPALDGKPLVPMWPQELTARDGL KLVSYLTLPAEADANHDGKADKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA GKMHDDLLDAVQWAVKQGVTQPDDVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANLNTLLGTVPPYWASFYKQLTR RMGDPATEAGRQWLTERSPLSHVDKISKPLLIGQGANDPRVKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKA FNAVTESFLSQCLGGRVQPIGADLEGSSITAPEGADKINGLPDALKTHTQAIRK
Sequences:
>Translated_694_residues MQRLLLVSSMLLALSACSDKTAPASKNAATPTPATAAPAAPPELITRDALFGNPERANVSISPDGKYLSWVAPLEGVLNV WVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDNGGDEDFHLFSVNLTDGSSKDLTPFNKTNAEVYRVSAQHPE SIMVGMNDRDAKWHDLYRVDLASGTRTLVQKNTERLDAYLLDGDYQLRYATRATDDAGRELLVPDGKRWKSVDRIPFEDV TNTAPDGLTEDGKTLYMQDSRNRDTAALYAIDTDSNARTLLFESPRADVGNTLNDPKTGVVQAVSTDYLREEWKPLDNGI AADLQKLKSLGSGDANVAARTLDDRIWIVGYSAAETPLTYYRYDRANGGKLTKLFSARPALDGKPLVPMWPQELTARDGL KLVSYLTLPAEADANHDGKADKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA GKMHDDLLDAVQWAVKQGVTQPDDVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANLNTLLGTVPPYWASFYKQLTR RMGDPATEAGRQWLTERSPLSHVDKISKPLLIGQGANDPRVKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKA FNAVTESFLSQCLGGRVQPIGADLEGSSITAPEGADKINGLPDALKTHTQAIRK >Mature_694_residues MQRLLLVSSMLLALSACSDKTAPASKNAATPTPATAAPAAPPELITRDALFGNPERANVSISPDGKYLSWVAPLEGVLNV WVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDNGGDEDFHLFSVNLTDGSSKDLTPFNKTNAEVYRVSAQHPE SIMVGMNDRDAKWHDLYRVDLASGTRTLVQKNTERLDAYLLDGDYQLRYATRATDDAGRELLVPDGKRWKSVDRIPFEDV TNTAPDGLTEDGKTLYMQDSRNRDTAALYAIDTDSNARTLLFESPRADVGNTLNDPKTGVVQAVSTDYLREEWKPLDNGI AADLQKLKSLGSGDANVAARTLDDRIWIVGYSAAETPLTYYRYDRANGGKLTKLFSARPALDGKPLVPMWPQELTARDGL KLVSYLTLPAEADANHDGKADKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA GKMHDDLLDAVQWAVKQGVTQPDDVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANLNTLLGTVPPYWASFYKQLTR RMGDPATEAGRQWLTERSPLSHVDKISKPLLIGQGANDPRVKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKA FNAVTESFLSQCLGGRVQPIGADLEGSSITAPEGADKINGLPDALKTHTQAIRK
Specific function: This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N- acetylated amino acid and a peptide with a free N-terminus [H]
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9C family [H]
Homologues:
Organism=Homo sapiens, GI23510451, Length=233, Percent_Identity=30.4721030042918, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI194394146, Length=247, Percent_Identity=28.3400809716599, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI18450280, Length=253, Percent_Identity=28.0632411067194, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI37577089, Length=253, Percent_Identity=28.0632411067194, Blast_Score=72, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25144537, Length=653, Percent_Identity=39.2036753445636, Blast_Score=453, Evalue=1e-127, Organism=Caenorhabditis elegans, GI25144540, Length=404, Percent_Identity=47.7722772277228, Blast_Score=372, Evalue=1e-103, Organism=Caenorhabditis elegans, GI25144543, Length=560, Percent_Identity=35.5357142857143, Blast_Score=333, Evalue=2e-91, Organism=Caenorhabditis elegans, GI17552908, Length=230, Percent_Identity=30.8695652173913, Blast_Score=110, Evalue=4e-24, Organism=Caenorhabditis elegans, GI25149159, Length=250, Percent_Identity=30, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI45551969, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI45550825, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI45553511, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR001375 - InterPro: IPR004106 [H]
Pfam domain/function: PF00326 Peptidase_S9 [H]
EC number: =3.4.19.1 [H]
Molecular weight: Translated: 75766; Mature: 75766
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00698 GLYCOSYL_HYDROL_F9_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRLLLVSSMLLALSACSDKTAPASKNAATPTPATAAPAAPPELITRDALFGNPERANVS CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE ISPDGKYLSWVAPLEGVLNVWVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDN ECCCCCEEEEHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCEEEECCCEEEEEECC GGDEDFHLFSVNLTDGSSKDLTPFNKTNAEVYRVSAQHPESIMVGMNDRDAKWHDLYRVD CCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHEEEEEE LASGTRTLVQKNTERLDAYLLDGDYQLRYATRATDDAGRELLVPDGKRWKSVDRIPFEDV ECCCHHHHHHCCHHHEEEEEECCCEEEEEEECCCCCCCCEEECCCCHHHCCCCCCCCHHH TNTAPDGLTEDGKTLYMQDSRNRDTAALYAIDTDSNARTLLFESPRADVGNTLNDPKTGV CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHH VQAVSTDYLREEWKPLDNGIAADLQKLKSLGSGDANVAARTLDDRIWIVGYSAAETPLTY HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCCEEE YRYDRANGGKLTKLFSARPALDGKPLVPMWPQELTARDGLKLVSYLTLPAEADANHDGKA EEEECCCCCCEEEEHHCCCCCCCCCCCCCCCHHHHHHCCCEEEHEEECCCCCCCCCCCCC DKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA CCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCHHHCCCCCCCCC GKMHDDLLDAVQWAVKQGVTQPDDVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANL CCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEEECCCHHHCCEEEECCCCC NTLLGTVPPYWASFYKQLTRRMGDPATEAGRQWLTERSPLSHVDKISKPLLIGQGANDPR HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCEEEECCCCCCC VKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKAFNAVTESFLSQCLGGRVQPI CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC GADLEGSSITAPEGADKINGLPDALKTHTQAIRK CCCCCCCEECCCCCCHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure MQRLLLVSSMLLALSACSDKTAPASKNAATPTPATAAPAAPPELITRDALFGNPERANVS CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE ISPDGKYLSWVAPLEGVLNVWVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDN ECCCCCEEEEHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCEEEECCCEEEEEECC GGDEDFHLFSVNLTDGSSKDLTPFNKTNAEVYRVSAQHPESIMVGMNDRDAKWHDLYRVD CCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHEEEEEE LASGTRTLVQKNTERLDAYLLDGDYQLRYATRATDDAGRELLVPDGKRWKSVDRIPFEDV ECCCHHHHHHCCHHHEEEEEECCCEEEEEEECCCCCCCCEEECCCCHHHCCCCCCCCHHH TNTAPDGLTEDGKTLYMQDSRNRDTAALYAIDTDSNARTLLFESPRADVGNTLNDPKTGV CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHH VQAVSTDYLREEWKPLDNGIAADLQKLKSLGSGDANVAARTLDDRIWIVGYSAAETPLTY HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCCEEE YRYDRANGGKLTKLFSARPALDGKPLVPMWPQELTARDGLKLVSYLTLPAEADANHDGKA EEEECCCCCCEEEEHHCCCCCCCCCCCCCCCHHHHHHCCCEEEHEEECCCCCCCCCCCCC DKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA CCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCHHHCCCCCCCCC GKMHDDLLDAVQWAVKQGVTQPDDVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANL CCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEEECCCHHHCCEEEECCCCC NTLLGTVPPYWASFYKQLTRRMGDPATEAGRQWLTERSPLSHVDKISKPLLIGQGANDPR HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCEEEECCCCCCC VKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKAFNAVTESFLSQCLGGRVQPI CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC GADLEGSSITAPEGADKINGLPDALKTHTQAIRK CCCCCCCEECCCCCCHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10382966; 12037315 [H]