| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is accA1 [H]
Identifier: 84625778
GI number: 84625778
Start: 4646514
End: 4648541
Strand: Reverse
Name: accA1 [H]
Synonym: XOO_4121
Alternate gene names: 84625778
Gene position: 4648541-4646514 (Counterclockwise)
Preceding gene: 84625779
Following gene: 84625777
Centisome position: 94.1
GC content: 65.83
Gene sequence:
>2028_bases ATGACCCAGCGCGACCCTATCGCCGCAGCAACGCAAGCGCCCTTCGACAAGATCCTGATCGCCAATCGCGGGGAGATCGC CTGCCGGGTGATCGCGACCTGCCGCACCCTCGGCATTGCGACGGTGGCGGTGTATTCGGATGCAGACCGCAATGCACGGC ATGTGCGTCTGGCAGACGAAGCCGTCCACATCGGTGCCTCCCCGGCGCAGCAAAGCTATCTGCGTGGCGAAGCGATTCTC GAAGCGGCGCGCGCAACCGGTGCGCAGGCGATCCACCCGGGTTATGGCTTTCTCTCGGAAAACGCCACATTTGCCGAGGC CTGTGCGCACGCTGGCATCGTCTTCATCGGCCCACCGGCAGCGGCGATTCGCGCGATGGGCGACAAGAGCGCTGCCAAGG CGCTGATGCAACGTGCCGGTGTGCCGCTGACGCCTGGCTACCACGGCGATGAGCAGGCGCCGGCATTCTTGCGTGCGCAA GCCGACGCAATCGGCTACCCGGTACTGATCAAAGCCAGTGCCGGTGGCGGCGGCAAGGGCATGCGCCGGGTGGATGCCAG CGCGGCCTTCGAAGATGCGTTGGCTAGCTGTCAGCGCGAAGCGCAGTCGGCGTTTGGCAATGCGCATGTGCTGGTGGAGA AATATGTCGAGCGGCCGCGGCATATCGAAATCCAGGTGTTCGGCGATACGCATGGCCAGGTGGTGCACCTGTTTGAGCGC GACTGCTCGGTGCAGCGTCGCCACCAGAAAGTGCTGGAAGAAGCGCCTGCGCCCGGCATGAGCGAGGCGCGGCGCGCGGC GATGGGCAAGGCGGCGGTGGATGCGGCGCAAGCGGTGGGTTACGTCGGTGCGGGCACGGTGGAATTCATCGCTGGCCCGG ACGGCGATTTCTATTTCATGGAAATGAACACCCGGCTGCAGGTGGAGCATCCGGTGACCGAGTTGATCACCGGCACCGAT CTGGTCGAATGGCAATTGCAGGTTGCCGCTGGCGCACGCTTGCCGCGTCGGCAGCACGAGTTGCGCATTCACGGGCATGC GCTGGAGGCGCGCCTGTACGCCGAAGATGCCGAGCGCGGTTTTCTGCCGTCCACCGGAACGCTGCGCCAGCTGCAGTTGC CTGTCGCCAGCGCGCATGTCCGCATCGATGCGGGCGTGGAGCAAGGCGACACCATCAGCCCTTACTACGACCCGATGATT GCCAAGCTAATCGTCTGGGAGACCGATCGCCCCGCAGCGCTGGCGCGCATGCGCGCGGCATTAGCGCAGTTCCATGCGGT GGGCGTCACCACCAACCGTGCATTCCTGTCGCGCCTGATTGCGACCGCGGCGTTCGCATCGGCGAGCCTGGACACCGCGC TGATCGAGCGCGAACACGCCGTGCTGTTTCCACAGGCGCGCAGCCCGGACACCGCATGGTGGTGCCTGGCGGCGGTGTTG ATCGCAGATACGTTGCCGGCCGCGGTGGCTGATCCGGCCGATCCGCACTCGCCGTGGCAGCAAAACGATGGTTGGCGTAT CGGTGCACGTGCAGTCCAGCGCGTGATTCTGGAAGCAAATGGCGAGCGCCGCCAACTCGATGTACGACCCGATGCCGATG GCTGGCAAGTCACCAACGCAGGCCAGACGCATACCTTGCGCTACCACCCGCACGATACGGGCTTGCGTGTGGAGATGGAC GGCCGGCAATGGCGTGTACAGGTGTTGCGTGACGGCAGCCTGCTGACCCTGATCGACGCCGCGCAGCGGGCAACCTTCCA TTACCACGATGCGCTGGTGGAAGCTGATCAACCGGCGCAGGACGCTGGCGGGCTGACCGCACCAATGCCCGGCCGCATCG TCTCCCTGGCCGCAACGGTGGGCCAGCCGGTCACCCGCGGGCAGGCGCTGGTGGTGCTGGAAGCGATGAAGATGGAGCAC ACCCTGCACGCGCCCAGCGATGGCACGGTCCAGGCGTATCTGGTGGCCGAAGGCGATCTGGTGGCCGACGGTGCAGCGCT GGTGGAATTCGTGTCCGCATCTGCGTAG
Upstream 100 bases:
>100_bases GGCAACAAACCTGCTTGCGCCAGCTGTAGGTGTGAAGCAGACAAGCCGTTTTTCTTCGTAGGACGACCCGCCGCTACGGC GACGTGCAGAGACTGATCCG
Downstream 100 bases:
>100_bases CGACGCATGGCTGCGTGACCAACGGCACGTTCGCTTGTCCGTGGGCTGCCGCTAACGTGGCACATCGGCCGGCTTGGCCG CAGTGCCACCGGAGGTCTCA
Product: biotin carboxylase
Products: NA
Alternate protein names: Biotin carboxylase; Biotin carboxyl carrier protein; BCCP [H]
Number of amino acids: Translated: 675; Mature: 674
Protein sequence:
>675_residues MTQRDPIAAATQAPFDKILIANRGEIACRVIATCRTLGIATVAVYSDADRNARHVRLADEAVHIGASPAQQSYLRGEAIL EAARATGAQAIHPGYGFLSENATFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQ ADAIGYPVLIKASAGGGGKGMRRVDASAAFEDALASCQREAQSAFGNAHVLVEKYVERPRHIEIQVFGDTHGQVVHLFER DCSVQRRHQKVLEEAPAPGMSEARRAAMGKAAVDAAQAVGYVGAGTVEFIAGPDGDFYFMEMNTRLQVEHPVTELITGTD LVEWQLQVAAGARLPRRQHELRIHGHALEARLYAEDAERGFLPSTGTLRQLQLPVASAHVRIDAGVEQGDTISPYYDPMI AKLIVWETDRPAALARMRAALAQFHAVGVTTNRAFLSRLIATAAFASASLDTALIEREHAVLFPQARSPDTAWWCLAAVL IADTLPAAVADPADPHSPWQQNDGWRIGARAVQRVILEANGERRQLDVRPDADGWQVTNAGQTHTLRYHPHDTGLRVEMD GRQWRVQVLRDGSLLTLIDAAQRATFHYHDALVEADQPAQDAGGLTAPMPGRIVSLAATVGQPVTRGQALVVLEAMKMEH TLHAPSDGTVQAYLVAEGDLVADGAALVEFVSASA
Sequences:
>Translated_675_residues MTQRDPIAAATQAPFDKILIANRGEIACRVIATCRTLGIATVAVYSDADRNARHVRLADEAVHIGASPAQQSYLRGEAIL EAARATGAQAIHPGYGFLSENATFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQ ADAIGYPVLIKASAGGGGKGMRRVDASAAFEDALASCQREAQSAFGNAHVLVEKYVERPRHIEIQVFGDTHGQVVHLFER DCSVQRRHQKVLEEAPAPGMSEARRAAMGKAAVDAAQAVGYVGAGTVEFIAGPDGDFYFMEMNTRLQVEHPVTELITGTD LVEWQLQVAAGARLPRRQHELRIHGHALEARLYAEDAERGFLPSTGTLRQLQLPVASAHVRIDAGVEQGDTISPYYDPMI AKLIVWETDRPAALARMRAALAQFHAVGVTTNRAFLSRLIATAAFASASLDTALIEREHAVLFPQARSPDTAWWCLAAVL IADTLPAAVADPADPHSPWQQNDGWRIGARAVQRVILEANGERRQLDVRPDADGWQVTNAGQTHTLRYHPHDTGLRVEMD GRQWRVQVLRDGSLLTLIDAAQRATFHYHDALVEADQPAQDAGGLTAPMPGRIVSLAATVGQPVTRGQALVVLEAMKMEH TLHAPSDGTVQAYLVAEGDLVADGAALVEFVSASA >Mature_674_residues TQRDPIAAATQAPFDKILIANRGEIACRVIATCRTLGIATVAVYSDADRNARHVRLADEAVHIGASPAQQSYLRGEAILE AARATGAQAIHPGYGFLSENATFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQA DAIGYPVLIKASAGGGGKGMRRVDASAAFEDALASCQREAQSAFGNAHVLVEKYVERPRHIEIQVFGDTHGQVVHLFERD CSVQRRHQKVLEEAPAPGMSEARRAAMGKAAVDAAQAVGYVGAGTVEFIAGPDGDFYFMEMNTRLQVEHPVTELITGTDL VEWQLQVAAGARLPRRQHELRIHGHALEARLYAEDAERGFLPSTGTLRQLQLPVASAHVRIDAGVEQGDTISPYYDPMIA KLIVWETDRPAALARMRAALAQFHAVGVTTNRAFLSRLIATAAFASASLDTALIEREHAVLFPQARSPDTAWWCLAAVLI ADTLPAAVADPADPHSPWQQNDGWRIGARAVQRVILEANGERRQLDVRPDADGWQVTNAGQTHTLRYHPHDTGLRVEMDG RQWRVQVLRDGSLLTLIDAAQRATFHYHDALVEADQPAQDAGGLTAPMPGRIVSLAATVGQPVTRGQALVVLEAMKMEHT LHAPSDGTVQAYLVAEGDLVADGAALVEFVSASA
Specific function: This protein carries two functions:biotin carboxyl carrier protein and biotin carboxyltransferase [H]
COG id: COG4770
COG function: function code I; Acetyl/propionyl-CoA carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotinyl-binding domain [H]
Homologues:
Organism=Homo sapiens, GI116805327, Length=679, Percent_Identity=45.9499263622975, Blast_Score=587, Evalue=1e-167, Organism=Homo sapiens, GI189095269, Length=683, Percent_Identity=41.8740849194729, Blast_Score=470, Evalue=1e-132, Organism=Homo sapiens, GI65506442, Length=680, Percent_Identity=41.7647058823529, Blast_Score=470, Evalue=1e-132, Organism=Homo sapiens, GI295821183, Length=666, Percent_Identity=41.8918918918919, Blast_Score=456, Evalue=1e-128, Organism=Homo sapiens, GI106049528, Length=497, Percent_Identity=42.6559356136821, Blast_Score=364, Evalue=1e-100, Organism=Homo sapiens, GI106049295, Length=497, Percent_Identity=42.6559356136821, Blast_Score=364, Evalue=1e-100, Organism=Homo sapiens, GI106049292, Length=497, Percent_Identity=42.6559356136821, Blast_Score=364, Evalue=1e-100, Organism=Homo sapiens, GI38679974, Length=731, Percent_Identity=29.4117647058824, Blast_Score=271, Evalue=1e-72, Organism=Homo sapiens, GI38679971, Length=731, Percent_Identity=29.4117647058824, Blast_Score=271, Evalue=1e-72, Organism=Homo sapiens, GI38679960, Length=731, Percent_Identity=29.4117647058824, Blast_Score=271, Evalue=1e-72, Organism=Homo sapiens, GI38679977, Length=731, Percent_Identity=29.4117647058824, Blast_Score=271, Evalue=1e-72, Organism=Homo sapiens, GI38679967, Length=731, Percent_Identity=29.4117647058824, Blast_Score=271, Evalue=1e-72, Organism=Homo sapiens, GI134142062, Length=736, Percent_Identity=27.445652173913, Blast_Score=246, Evalue=4e-65, Organism=Escherichia coli, GI1789654, Length=447, Percent_Identity=50.1118568232662, Blast_Score=408, Evalue=1e-115, Organism=Caenorhabditis elegans, GI71987519, Length=667, Percent_Identity=47.2263868065967, Blast_Score=556, Evalue=1e-158, Organism=Caenorhabditis elegans, GI17567343, Length=688, Percent_Identity=40.843023255814, Blast_Score=448, Evalue=1e-126, Organism=Caenorhabditis elegans, GI17562816, Length=504, Percent_Identity=43.0555555555556, Blast_Score=352, Evalue=3e-97, Organism=Caenorhabditis elegans, GI133931226, Length=710, Percent_Identity=27.6056338028169, Blast_Score=223, Evalue=2e-58, Organism=Caenorhabditis elegans, GI71997168, Length=519, Percent_Identity=28.131021194605, Blast_Score=201, Evalue=1e-51, Organism=Caenorhabditis elegans, GI71997163, Length=516, Percent_Identity=28.1007751937984, Blast_Score=199, Evalue=4e-51, Organism=Saccharomyces cerevisiae, GI6319685, Length=446, Percent_Identity=44.8430493273543, Blast_Score=397, Evalue=1e-111, Organism=Saccharomyces cerevisiae, GI6319695, Length=500, Percent_Identity=40.4, Blast_Score=321, Evalue=2e-88, Organism=Saccharomyces cerevisiae, GI6321376, Length=505, Percent_Identity=40.7920792079208, Blast_Score=307, Evalue=4e-84, Organism=Saccharomyces cerevisiae, GI6324343, Length=731, Percent_Identity=28.4541723666211, Blast_Score=258, Evalue=3e-69, Organism=Saccharomyces cerevisiae, GI6323863, Length=709, Percent_Identity=28.490832157969, Blast_Score=256, Evalue=1e-68, Organism=Drosophila melanogaster, GI24651757, Length=667, Percent_Identity=46.6266866566717, Blast_Score=590, Evalue=1e-168, Organism=Drosophila melanogaster, GI24651759, Length=627, Percent_Identity=45.4545454545455, Blast_Score=535, Evalue=1e-152, Organism=Drosophila melanogaster, GI281363050, Length=505, Percent_Identity=42.7722772277228, Blast_Score=353, Evalue=3e-97, Organism=Drosophila melanogaster, GI24652224, Length=505, Percent_Identity=42.7722772277228, Blast_Score=353, Evalue=3e-97, Organism=Drosophila melanogaster, GI24652222, Length=505, Percent_Identity=42.7722772277228, Blast_Score=353, Evalue=3e-97, Organism=Drosophila melanogaster, GI24652220, Length=505, Percent_Identity=42.7722772277228, Blast_Score=353, Evalue=3e-97, Organism=Drosophila melanogaster, GI24652218, Length=505, Percent_Identity=42.7722772277228, Blast_Score=353, Evalue=3e-97, Organism=Drosophila melanogaster, GI24652212, Length=505, Percent_Identity=42.7722772277228, Blast_Score=352, Evalue=4e-97, Organism=Drosophila melanogaster, GI24652210, Length=505, Percent_Identity=42.7722772277228, Blast_Score=352, Evalue=4e-97, Organism=Drosophila melanogaster, GI24652214, Length=505, Percent_Identity=42.7722772277228, Blast_Score=352, Evalue=4e-97, Organism=Drosophila melanogaster, GI19921944, Length=505, Percent_Identity=42.7722772277228, Blast_Score=352, Evalue=4e-97, Organism=Drosophila melanogaster, GI24652216, Length=505, Percent_Identity=42.7722772277228, Blast_Score=352, Evalue=4e-97, Organism=Drosophila melanogaster, GI161076409, Length=703, Percent_Identity=29.7297297297297, Blast_Score=268, Evalue=1e-71, Organism=Drosophila melanogaster, GI24586458, Length=703, Percent_Identity=29.7297297297297, Blast_Score=268, Evalue=1e-71, Organism=Drosophila melanogaster, GI161076407, Length=703, Percent_Identity=29.7297297297297, Blast_Score=267, Evalue=2e-71, Organism=Drosophila melanogaster, GI24586460, Length=703, Percent_Identity=29.7297297297297, Blast_Score=267, Evalue=2e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR001882 - InterPro: IPR011764 - InterPro: IPR005482 - InterPro: IPR000089 - InterPro: IPR005479 - InterPro: IPR005481 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 - InterPro: IPR011053 [H]
Pfam domain/function: PF02785 Biotin_carb_C; PF00364 Biotin_lipoyl; PF00289 CPSase_L_chain; PF02786 CPSase_L_D2 [H]
EC number: =6.3.4.14 [H]
Molecular weight: Translated: 72369; Mature: 72237
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS50975 ATP_GRASP ; PS00866 CPSASE_1 ; PS00867 CPSASE_2 ; PS50979 BC ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQRDPIAAATQAPFDKILIANRGEIACRVIATCRTLGIATVAVYSDADRNARHVRLADE CCCCCCCCHHCCCCCCEEEEECCCCEEHHHHHHHHHHCEEEEEEEECCCCCCCEEEEECC AVHIGASPAQQSYLRGEAILEAARATGAQAIHPGYGFLSENATFAEACAHAGIVFIGPPA EEECCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHCCEEEECCCH AAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQADAIGYPVLIKASAGGGGKG HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCC MRRVDASAAFEDALASCQREAQSAFGNAHVLVEKYVERPRHIEIQVFGDTHGQVVHLFER CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEHH DCSVQRRHQKVLEEAPAPGMSEARRAAMGKAAVDAAQAVGYVGAGTVEFIAGPDGDFYFM CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEE EMNTRLQVEHPVTELITGTDLVEWQLQVAAGARLPRRQHELRIHGHALEARLYAEDAERG EECCEEEECCCHHHHHCCCCEEEEEEEEHHCCCCCCCCCEEEEECEEEEEEEEHHHHCCC FLPSTGTLRQLQLPVASAHVRIDAGVEQGDTISPYYDPMIAKLIVWETDRPAALARMRAA CCCCCCCCEEEECCEEEEEEEEECCCCCCCCCCCHHHHHEEEEEEEECCCCHHHHHHHHH LAQFHAVGVTTNRAFLSRLIATAAFASASLDTALIEREHAVLFPQARSPDTAWWCLAAVL HHHHHHEEEECCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH IADTLPAAVADPADPHSPWQQNDGWRIGARAVQRVILEANGERRQLDVRPDADGWQVTNA HHHCCCHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEECC GQTHTLRYHPHDTGLRVEMDGRQWRVQVLRDGSLLTLIDAAQRATFHYHDALVEADQPAQ CCEEEEEECCCCCCEEEEECCCEEEEEEEECCCEEEEEHHHHHCEEEHHHHHHCCCCCCH DAGGLTAPMPGRIVSLAATVGQPVTRGQALVVLEAMKMEHTLHAPSDGTVQAYLVAEGDL HCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCCCCCEEEEEEECCCE VADGAALVEFVSASA EECHHHHHHHHHCCC >Mature Secondary Structure TQRDPIAAATQAPFDKILIANRGEIACRVIATCRTLGIATVAVYSDADRNARHVRLADE CCCCCCCHHCCCCCCEEEEECCCCEEHHHHHHHHHHCEEEEEEEECCCCCCCEEEEECC AVHIGASPAQQSYLRGEAILEAARATGAQAIHPGYGFLSENATFAEACAHAGIVFIGPPA EEECCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHCCEEEECCCH AAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQADAIGYPVLIKASAGGGGKG HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCC MRRVDASAAFEDALASCQREAQSAFGNAHVLVEKYVERPRHIEIQVFGDTHGQVVHLFER CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEHH DCSVQRRHQKVLEEAPAPGMSEARRAAMGKAAVDAAQAVGYVGAGTVEFIAGPDGDFYFM CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEE EMNTRLQVEHPVTELITGTDLVEWQLQVAAGARLPRRQHELRIHGHALEARLYAEDAERG EECCEEEECCCHHHHHCCCCEEEEEEEEHHCCCCCCCCCEEEEECEEEEEEEEHHHHCCC FLPSTGTLRQLQLPVASAHVRIDAGVEQGDTISPYYDPMIAKLIVWETDRPAALARMRAA CCCCCCCCEEEECCEEEEEEEEECCCCCCCCCCCHHHHHEEEEEEEECCCCHHHHHHHHH LAQFHAVGVTTNRAFLSRLIATAAFASASLDTALIEREHAVLFPQARSPDTAWWCLAAVL HHHHHHEEEECCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH IADTLPAAVADPADPHSPWQQNDGWRIGARAVQRVILEANGERRQLDVRPDADGWQVTNA HHHCCCHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEECC GQTHTLRYHPHDTGLRVEMDGRQWRVQVLRDGSLLTLIDAAQRATFHYHDALVEADQPAQ CCEEEEEECCCCCCEEEEECCCEEEEEEEECCCEEEEEHHHHHCEEEHHHHHHCCCCCCH DAGGLTAPMPGRIVSLAATVGQPVTRGQALVVLEAMKMEHTLHAPSDGTVQAYLVAEGDL HCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCCCCCEEEEEEECCCE VADGAALVEFVSASA EECHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]