| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is icd [H]
Identifier: 84625600
GI number: 84625600
Start: 4440123
End: 4442354
Strand: Reverse
Name: icd [H]
Synonym: XOO_3943
Alternate gene names: 84625600
Gene position: 4442354-4440123 (Counterclockwise)
Preceding gene: 84625604
Following gene: 84625599
Centisome position: 89.92
GC content: 62.19
Gene sequence:
>2232_bases ATGCCTAATACCCCCAAGATCCTCTACACGCTCACCGACGAAGCACCTTACCTGGCCACGCAGTCGCTGCTGCCGATCAT CGATGCCTACACCGACACCGCCGGCATCGTGGTCGAAACGCGCGATATCTCGCTGGCCGGGCGCATCCTGGCGCTGTTTC CCGAGTATTTGAGCGACACGCAAAAGGTTGCCGACGATCTGGGCGAACTCGGTGAGCTGGCTACCACGCCGGAAGCCAAC ATCATCAAGCTGCCCAACATCAGCGCCTCGGTGCCGCAGCTCAAGGCTGCGATCAAGGAGCTGCAGGGCCAGGGCTATGC GCTGCCGGCGTATCCGGACGAGCCCAAGGACGCAGCCGAAAAAGACATCAAGGCACGCTACGACAAGGTCAAGGGCAGTG CGGTGAATCCAGTGCTGCGCGAAGGCAATTCCGATCGTCGCGCACCGCTGTCGGTGAAGAACTATGCGCGCAAGCACCCG CACCGCATGGGCAAGTGGAGCAGCGATTCCAAGTCGCACGTGTCGCACATGGAGTCTGGCGATTTCTTCGGTAGCGAGCA GTCCACCACGCTGGCCGACGCCGGCACGCTCAAGATCGAATTCGTCGGTGCCGACGGCAGCAGCACCGTGCTGAAGGACA AGGTCGCGGTCAAAGCCGGTGAAATCGTCGATGCCGCGGTGTTGAGCAAGCGCGCGCTGGCCAGCTTCATCGACGCGCAG ATTGCCGATGCCAAGGCCCGCGACGTGCTGTTCTCGGTGCATCTGAAAGCCACCATGATGAAGGTCTCCGATCCGGTGCT GTTCGGTGTGGTGGTCGGCGAGTTCTATAAGGACACGCTGAGCAGGCATGCCGATGCGCTCAAGTCGGTCGGCTTCGATC CCAACAACGGCATCGGCGATTTGTACGCACGCATCGGCACGTTGCCGGAAGACCAGCAGGCACGGATCAAGGCCGATATC CAGGCCGAATACGCGCAGCGCCCTGGGCTGGCGATGGTCAATTCGGACAAGGGCATCACCAATCTGCATGTGCCCAGCGA CGTGATCGTCGATGCATCCATGCCGGCGATGATTCGCGACTCCGGCCAGATGTGGAACGCGCAAGGCACGTTGCAGGATA CCAAGGCGGTGATTCCGGACCGTTGCTACGCCGACGTGTATCAGGCAGTGATCGACGACTGCAAGGCGCACGGCGCGTTC GATCCGTCCACAATGGGCTCGGTGCCCAATGTGGGCTTGATGGCGCAGAAGGCCGAAGAATACGGCTCACACGACAAGAC CTTTCAGATGGCCGCTGCCGGCACCGTCAAGGTCACCGATGGCAATGGCAAGACGGTGTTCAAGCATGCCGTGGAAGCCG GCGATCTGTGGCGCATGTGTCAGGTCAAGGACGCGCCGATCCAGGACTGGGTCAAGCTTGCCGTCGAGCGCGCACGTCTG AGCGACACCCCGGCCGTGTTCTGGCTGGACCAGGCACGCGCGCACGATGCGCAGGTCATTGCCAAGGTCGAACAGTATCT GAAGGATCACGACACCAATGGCCTGGATATCCGCATCCTGCCGCCGGTGGAAGCGACGGCCTTCTCGCTGGAGCGCATCC GCAAGGGCCAGGACACCATCTCGGTTACCGGCAATGTGCTGCGCGATTACCTCACCGACCTGTTCCCGATCATGGAGCTG GGCACCAGCGCCAAGATGCTTTCCATCGTGCCGCTGATGGCAGGTGGCGGTCTGTTCGAAACCGGTGCCGGTGGTTCGGC GCCCAAACATGTGCAGCAGTTCGTCGAAGAAAACTGCCTGCGCTGGGATTCGCTGGGGGAATTCCTGGCCCTGGCTGCCT CGCTGGAGCACCTGGGCAACCGTTACGACAATCCGTCGGCCACGGTGCTGGCCAAGGCGCTGGATGTCGCCAACGGCCAG TTCCTGGACAACAACAAGTCGCCGGCGCGCAAGGTCGGCGAGCTCGACAACCGCGGCAGTCATTTCTATCTGGCGATGTA CTGGGCGCAAGCCCTGGCCGCGCAGACCGAAGACACTGCGCTGCAGGGCAGGTTCGCGCCGCTGGCCAGGGCCCTGACCG AGAACGAAGCCACCATCGTGGCCGAGCTCAACGGCGCACAGGGCAAGCCGGTGGACATCGGTGGTTACTACCATCCCGAT CTGGCCAAGGTCAGCGAAGCGATGCGTCCAAGCAAGACCTTCAACGATATCCTGGCCACGTTGAAAGCCTGA
Upstream 100 bases:
>100_bases ACAATAGGCGACCAAGTCGGGGGCAGTCCGATGCAGTGCACCCCGCTCAGCGTACGCCGTCGTACGGTTGATCCCCCTTC CAGAGGTCGTTCAGCGCACC
Downstream 100 bases:
>100_bases GTGTTTGCATCGCCTGGCGGTGCATGCACGTGAGTCATCAAGGCCCGTCTCGCAAGAGGCGGGCCTTGTCGTTTCAGCGG AATGGCGACAAGGCCGTCAT
Product: isocitrate dehydrogenase
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 743; Mature: 742
Protein sequence:
>743_residues MPNTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEYLSDTQKVADDLGELGELATTPEAN IIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHP HRMGKWSSDSKSHVSHMESGDFFGSEQSTTLADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSRHADALKSVGFDPNNGIGDLYARIGTLPEDQQARIKADI QAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGTLQDTKAVIPDRCYADVYQAVIDDCKAHGAF DPSTMGSVPNVGLMAQKAEEYGSHDKTFQMAAAGTVKVTDGNGKTVFKHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL SDTPAVFWLDQARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATAFSLERIRKGQDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQ FLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDTALQGRFAPLARALTENEATIVAELNGAQGKPVDIGGYYHPD LAKVSEAMRPSKTFNDILATLKA
Sequences:
>Translated_743_residues MPNTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEYLSDTQKVADDLGELGELATTPEAN IIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHP HRMGKWSSDSKSHVSHMESGDFFGSEQSTTLADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSRHADALKSVGFDPNNGIGDLYARIGTLPEDQQARIKADI QAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGTLQDTKAVIPDRCYADVYQAVIDDCKAHGAF DPSTMGSVPNVGLMAQKAEEYGSHDKTFQMAAAGTVKVTDGNGKTVFKHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL SDTPAVFWLDQARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATAFSLERIRKGQDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQ FLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDTALQGRFAPLARALTENEATIVAELNGAQGKPVDIGGYYHPD LAKVSEAMRPSKTFNDILATLKA >Mature_742_residues PNTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEYLSDTQKVADDLGELGELATTPEANI IKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPH RMGKWSSDSKSHVSHMESGDFFGSEQSTTLADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQI ADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSRHADALKSVGFDPNNGIGDLYARIGTLPEDQQARIKADIQ AEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGTLQDTKAVIPDRCYADVYQAVIDDCKAHGAFD PSTMGSVPNVGLMAQKAEEYGSHDKTFQMAAAGTVKVTDGNGKTVFKHAVEAGDLWRMCQVKDAPIQDWVKLAVERARLS DTPAVFWLDQARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATAFSLERIRKGQDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQF LDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDTALQGRFAPLARALTENEATIVAELNGAQGKPVDIGGYYHPDL AKVSEAMRPSKTFNDILATLKA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80343; Mature: 80212
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEYLSDT CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHH QKVADDLGELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAE HHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHH KDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCHHHHHHCCCC DFFGSEQSTTLADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ CCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSRHADALKSVGFDPNNGIGD HHCCHHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARIGTLPEDQQARIKADIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRD HHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEECCCCCHHHHC SGQMWNAQGTLQDTKAVIPDRCYADVYQAVIDDCKAHGAFDPSTMGSVPNVGLMAQKAEE CCCEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFQMAAAGTVKVTDGNGKTVFKHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL HCCCCCEEEEEECCEEEEECCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHC SDTPAVFWLDQARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATAFSLERIRKGQDTI CCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH RWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGS CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHCCCCCCC HFYLAMYWAQALAAQTEDTALQGRFAPLARALTENEATIVAELNGAQGKPVDIGGYYHPD EEEHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCC LAKVSEAMRPSKTFNDILATLKA HHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure PNTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEYLSDT CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHH QKVADDLGELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAE HHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHH KDIKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCHHHHHHCCCC DFFGSEQSTTLADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ CCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSRHADALKSVGFDPNNGIGD HHCCHHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARIGTLPEDQQARIKADIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRD HHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEECCCCCHHHHC SGQMWNAQGTLQDTKAVIPDRCYADVYQAVIDDCKAHGAFDPSTMGSVPNVGLMAQKAEE CCCEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFQMAAAGTVKVTDGNGKTVFKHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL HCCCCCEEEEEECCEEEEECCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHC SDTPAVFWLDQARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATAFSLERIRKGQDTI CCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH RWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGS CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHCCCCCCC HFYLAMYWAQALAAQTEDTALQGRFAPLARALTENEATIVAELNGAQGKPVDIGGYYHPD EEEHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCC LAKVSEAMRPSKTFNDILATLKA HHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]