| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is gph [C]
Identifier: 84624871
GI number: 84624871
Start: 3644881
End: 3645525
Strand: Reverse
Name: gph [C]
Synonym: XOO_3214
Alternate gene names: 84624871
Gene position: 3645525-3644881 (Counterclockwise)
Preceding gene: 84624872
Following gene: 84624870
Centisome position: 73.79
GC content: 65.12
Gene sequence:
>645_bases GTGAGTGCAGCCACGCTGTTTTTCGATCTGGACGGCACGCTGGTCGATTCGGAGCCCGGCATCGTCGCCAGCATCGTGTA TGCCTTCGACGAACTCGGGCAGCCGCGTCCATCTGCGCAGACCTTGCGCGCGTGGATCGGCCCGCCGTTGCGCGACAGCT TCGCCGAGTGTTTTGCAAACGATCCAGGGCGGGGGCAGCGTGCGCTCGGGCTCTACCGCGCGCGCTACGACGCGGTGGGC TGGACCGAGCTCAGCGTGTTCGACGGCATTGGCGAGGTGGTCGCCAGCCTGCAGCGCGCCGGTCATCGTCTGGCGGTGGT GACCTCGAAGAATGAGCGCTATGCGCGGCGCATCGTCGAGCATCTGCCATTTGGCGCTTGCTTCGAGGAGGTGATCGGTG CCAGCGAAGACGGCGAACGTCGCTTCAAGCCGGACCTCATTGCCGAAGCGCTGCGCCGTTTGCAGATCGAGAAAACTGGC TGCGTGATGATCGGCGACCGGCGCATGGATATTGATGGCGCCAATCACCACGGCATCCATAGCATCGGCGTGTTATGGGG CTTCGGCGACGAGGCTGAGTTGCGTGCCGCCGGTGCCGGTGCACTGGCACGCACCCCGGCTGACCTGGTGGCGTTGCTTC AGTGA
Upstream 100 bases:
>100_bases CCAAGGACGTCACCTACATTTCCACTGGCGGCGGTGCATTCCTGGAGTTTCTGGAAGGCAAGACCTTGCCGGCTGTGGCC GCACTGCAGGCCCGCGGTCA
Downstream 100 bases:
>100_bases TGAACAGTGCGCGTCGGCCGTTGCGTTGGCTTGGTCGACGCCTGCAGCCGCGGTTCGCATCGCGCTGAACACTCTTCATC GCTGCCGGGTTAGGGTGGCG
Product: indigoidine synthesis-like protein
Products: Glycolate; Phosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MSAATLFFDLDGTLVDSEPGIVASIVYAFDELGQPRPSAQTLRAWIGPPLRDSFAECFANDPGRGQRALGLYRARYDAVG WTELSVFDGIGEVVASLQRAGHRLAVVTSKNERYARRIVEHLPFGACFEEVIGASEDGERRFKPDLIAEALRRLQIEKTG CVMIGDRRMDIDGANHHGIHSIGVLWGFGDEAELRAAGAGALARTPADLVALLQ
Sequences:
>Translated_214_residues MSAATLFFDLDGTLVDSEPGIVASIVYAFDELGQPRPSAQTLRAWIGPPLRDSFAECFANDPGRGQRALGLYRARYDAVG WTELSVFDGIGEVVASLQRAGHRLAVVTSKNERYARRIVEHLPFGACFEEVIGASEDGERRFKPDLIAEALRRLQIEKTG CVMIGDRRMDIDGANHHGIHSIGVLWGFGDEAELRAAGAGALARTPADLVALLQ >Mature_213_residues SAATLFFDLDGTLVDSEPGIVASIVYAFDELGQPRPSAQTLRAWIGPPLRDSFAECFANDPGRGQRALGLYRARYDAVGW TELSVFDGIGEVVASLQRAGHRLAVVTSKNERYARRIVEHLPFGACFEEVIGASEDGERRFKPDLIAEALRRLQIEKTGC VMIGDRRMDIDGANHHGIHSIGVLWGFGDEAELRAAGAGALARTPADLVALLQ
Specific function: Unknown
COG id: COG0546
COG function: function code R; Predicted phosphatases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Escherichia coli, GI1789787, Length=209, Percent_Identity=26.7942583732057, Blast_Score=71, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006439 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: 3.1.3.18 [C]
Molecular weight: Translated: 23250; Mature: 23118
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAATLFFDLDGTLVDSEPGIVASIVYAFDELGQPRPSAQTLRAWIGPPLRDSFAECFAN CCCEEEEEECCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCC DPGRGQRALGLYRARYDAVGWTELSVFDGIGEVVASLQRAGHRLAVVTSKNERYARRIVE CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH HLPFGACFEEVIGASEDGERRFKPDLIAEALRRLQIEKTGCVMIGDRRMDIDGANHHGIH HCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCE SIGVLWGFGDEAELRAAGAGALARTPADLVALLQ EEEEEECCCCCHHHHHCCCCCHHCCHHHHHHHCC >Mature Secondary Structure SAATLFFDLDGTLVDSEPGIVASIVYAFDELGQPRPSAQTLRAWIGPPLRDSFAECFAN CCEEEEEECCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCC DPGRGQRALGLYRARYDAVGWTELSVFDGIGEVVASLQRAGHRLAVVTSKNERYARRIVE CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH HLPFGACFEEVIGASEDGERRFKPDLIAEALRRLQIEKTGCVMIGDRRMDIDGANHHGIH HCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCE SIGVLWGFGDEAELRAAGAGALARTPADLVALLQ EEEEEECCCCCHHHHHCCCCCHHCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Mg2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.57 {phosphoglycolate}} [C]
Substrates: D-Glycerate 2-phosphatelyc; H2O [C]
Specific reaction: D-Glycerate 2-phosphatelyc + H2O --> Glycolate + Phosphate [C]
General reaction: Additional information:
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12368430; 12218036 [H]