Click here to switch to the map view.

The map label for this gene is ycfJ [H]

Identifier: 84623064

GI number: 84623064

Start: 1530370

End: 1531161

Strand: Direct

Name: ycfJ [H]

Synonym: XOO_1407

Alternate gene names: 84623064

Gene position: 1530370-1531161 (Clockwise)

Preceding gene: 84623061

Following gene: 84623065

Centisome position: 30.98

GC content: 64.52

Gene sequence:

>792_bases
ATGAAGAGCAATACGACAACTATACTGGTCGCTGCTGGTGCCTTGCTGGTCGGAGGCGTCGCCACTGCCGCTTTCATGAA
TAACCGCCCGTCGTCCGGCGATTTTGTGGCCAATGGCCAGCCGGCACCGCGTGGCCTGGAATACGCCGACGTGGTCAGGG
TGGCCCCGATCAGCCAGCGCGAGCCGCAGTACGCGCAGGTCATCAACAGCAACGCCATCCGCGAAACCACCACCAGCACC
TCGCCGCGCGAAGTGTGTCGCGATGTGGTGGTGCAGGAACGTCTGCCGGAACGTGACGGCAATGTCGGTGGCACCGTCGC
CGGTGCCATCATCGGCGGCTTGATCGGCAACCAGGTGGGCGGCGGCAACGGTCGCAAGCTGGCGACCGCCGCAGGCGCGG
TGGGTGGTGGCTTCATCGGTAACAGCATCGACCGCAACCACGTCGGCGGCCGCGTGGTCGATCGTACCGAGCGCCAGTGC
CATACCGAAAATGCCAACTCGCAGTCCTCGCGTGTGGTGGGCTACGACGTGACTTATCGCAATGCCGATGGCACCACCGG
CACCATGCGCATGGACAGCAAGCCGGGCGAGCGCATTTCGCTGGGCGACGCCGACAACGTGGTGGCCTATGACGTCACCT
ACCGCTACGACGGTTTCGAAAAGACCGTGCGCATGAACGACAAGCCGGCCAGCGACCGTCTCCCGGTGGTCGATGGCCAG
CTGGTGACCCAGATGGCATCGACGGCGGGCGACTCCAACGTCCGTCAGGATGGTTTGAGCACCCGCCAGTAA

Upstream 100 bases:

>100_bases
AACTTAACCGTCGTGTTCATGAGCGATGGCGTTTTCGTTCAGGGTTCCCATGCTGGAATCACAGCCGTCAACAACGCGGT
GCGTCCGCAGGGAGCTGGTT

Downstream 100 bases:

>100_bases
CAGGCACGCCGAAGCGCTCGCAAGTAGCGTAGTGAATGAAAAAAGAGCCGGCAGTGCCGGCTCTTTTCGTTTGTGCCATT
CCCGGGCCGGCAGGCACCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKSNTTTILVAAGALLVGGVATAAFMNNRPSSGDFVANGQPAPRGLEYADVVRVAPISQREPQYAQVINSNAIRETTTST
SPREVCRDVVVQERLPERDGNVGGTVAGAIIGGLIGNQVGGGNGRKLATAAGAVGGGFIGNSIDRNHVGGRVVDRTERQC
HTENANSQSSRVVGYDVTYRNADGTTGTMRMDSKPGERISLGDADNVVAYDVTYRYDGFEKTVRMNDKPASDRLPVVDGQ
LVTQMASTAGDSNVRQDGLSTRQ

Sequences:

>Translated_263_residues
MKSNTTTILVAAGALLVGGVATAAFMNNRPSSGDFVANGQPAPRGLEYADVVRVAPISQREPQYAQVINSNAIRETTTST
SPREVCRDVVVQERLPERDGNVGGTVAGAIIGGLIGNQVGGGNGRKLATAAGAVGGGFIGNSIDRNHVGGRVVDRTERQC
HTENANSQSSRVVGYDVTYRNADGTTGTMRMDSKPGERISLGDADNVVAYDVTYRYDGFEKTVRMNDKPASDRLPVVDGQ
LVTQMASTAGDSNVRQDGLSTRQ
>Mature_263_residues
MKSNTTTILVAAGALLVGGVATAAFMNNRPSSGDFVANGQPAPRGLEYADVVRVAPISQREPQYAQVINSNAIRETTTST
SPREVCRDVVVQERLPERDGNVGGTVAGAIIGGLIGNQVGGGNGRKLATAAGAVGGGFIGNSIDRNHVGGRVVDRTERQC
HTENANSQSSRVVGYDVTYRNADGTTGTMRMDSKPGERISLGDADNVVAYDVTYRYDGFEKTVRMNDKPASDRLPVVDGQ
LVTQMASTAGDSNVRQDGLSTRQ

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=146, Percent_Identity=42.4657534246575, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 27675; Mature: 27675

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNTTTILVAAGALLVGGVATAAFMNNRPSSGDFVANGQPAPRGLEYADVVRVAPISQR
CCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHEEECCCCCC
EPQYAQVINSNAIRETTTSTSPREVCRDVVVQERLPERDGNVGGTVAGAIIGGLIGNQVG
CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
GGNGRKLATAAGAVGGGFIGNSIDRNHVGGRVVDRTERQCHTENANSQSSRVVGYDVTYR
CCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEE
NADGTTGTMRMDSKPGERISLGDADNVVAYDVTYRYDGFEKTVRMNDKPASDRLPVVDGQ
CCCCCCEEEEECCCCCCEEECCCCCCEEEEEEEEEECCHHHEEECCCCCCCCCCCCCCHH
LVTQMASTAGDSNVRQDGLSTRQ
HHHHHHHHCCCCCHHHCCCCCCC
>Mature Secondary Structure
MKSNTTTILVAAGALLVGGVATAAFMNNRPSSGDFVANGQPAPRGLEYADVVRVAPISQR
CCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHEEECCCCCC
EPQYAQVINSNAIRETTTSTSPREVCRDVVVQERLPERDGNVGGTVAGAIIGGLIGNQVG
CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
GGNGRKLATAAGAVGGGFIGNSIDRNHVGGRVVDRTERQCHTENANSQSSRVVGYDVTYR
CCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEE
NADGTTGTMRMDSKPGERISLGDADNVVAYDVTYRYDGFEKTVRMNDKPASDRLPVVDGQ
CCCCCCEEEEECCCCCCEEECCCCCCEEEEEEEEEECCHHHEEECCCCCCCCCCCCCCHH
LVTQMASTAGDSNVRQDGLSTRQ
HHHHHHHHCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]