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The map label for this gene is ygdL [H]

Identifier: 84623061

GI number: 84623061

Start: 1528350

End: 1529180

Strand: Direct

Name: ygdL [H]

Synonym: XOO_1404

Alternate gene names: 84623061

Gene position: 1528350-1529180 (Clockwise)

Preceding gene: 84623058

Following gene: 84623064

Centisome position: 30.94

GC content: 64.86

Gene sequence:

>831_bases
ATGAAAGCACAATCGCGTGAACGCTTTGCCGGTATCGACCGGCTGTATGGAGTCGGCACGGTCGAGCGCTTGTCGGCGTG
CCGCGTGGCGGTGGTCGGGATGGGCGGCGTGGGCTCGTGGGTGGTCGAGGCATTGGCGCGCACCGGGGTGGGCCAGATCC
GCCTGATCGATGCCGATGACCTGTGCGTTTCCAACACCAACCGGCAGTTGCCGGCGCTGGCCGGCCAGTACGGACGCAAC
AAGGCGCGTGCGATGGCCGAGCGCTGCGTGGCGATCAACCCTGACATCGAAGCCGATGCGGTGGAGGCGTTTCTGACCTC
CGGCAATATCGAAACCCTGCTGGGTGCGGGCTTCGATCTGGTGATCGATGCCTGCGACAGTTTCCGGGTCAAGGTGGAAA
CCATTGCCTGGTGCCGGCGGCGCAAATTGCCGCTGTTGACCGTGGGCGCGGCTGGCGGCCGCACCGATCCCACCCTGGTG
CGCGTGCGTGATGTCTCGCGCACCGAGCACGATGCAATGTTGGCGCTGATTCGCAAGAAGCTGCGCGGCGAATTCAATTT
CCCGAAGAACCCGCAGCGCTACTTCGGCGTGCCGGCGGTGTATTCGCTGGAAAACGTCAAATATCCACAGGCCGATGGCA
GCGTCTGCGGCATCCGTCCGCAGCTCGATGCCGATGCCACGCTCAAGCTGGATTGCGGGGCAGGGCTGGGCGCGGCCACG
CATATCACCGGTACCTTCGCGTTTGTTGCGGTGGGCAAGGCGTTGGAGATGTTGCTCAAGCCCAAGGCTGCAGCCGCGAG
GCCGGCAGCCGAGGCAGTTGCAGCCTCGTGA

Upstream 100 bases:

>100_bases
GGGATTGGTTGGGGGGCGAGTTCTGCATAGGTGGCTTCTGGGAGGCAACGTTCGTCGCGGCGGCGTGGGCGTGCCCGGGC
GAGGCGCGTAAAATAGGCCG

Downstream 100 bases:

>100_bases
TGTCGCCTGTCCATTGCCTGGTCGTGTCGACTACGCGGTCGCGGTGACGCGCATGCTCCTCTCAGTGCGGTAGACCGAAC
AAGCGACGCGCGTTGGCGCT

Product: molybdopterin biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MKAQSRERFAGIDRLYGVGTVERLSACRVAVVGMGGVGSWVVEALARTGVGQIRLIDADDLCVSNTNRQLPALAGQYGRN
KARAMAERCVAINPDIEADAVEAFLTSGNIETLLGAGFDLVIDACDSFRVKVETIAWCRRRKLPLLTVGAAGGRTDPTLV
RVRDVSRTEHDAMLALIRKKLRGEFNFPKNPQRYFGVPAVYSLENVKYPQADGSVCGIRPQLDADATLKLDCGAGLGAAT
HITGTFAFVAVGKALEMLLKPKAAAARPAAEAVAAS

Sequences:

>Translated_276_residues
MKAQSRERFAGIDRLYGVGTVERLSACRVAVVGMGGVGSWVVEALARTGVGQIRLIDADDLCVSNTNRQLPALAGQYGRN
KARAMAERCVAINPDIEADAVEAFLTSGNIETLLGAGFDLVIDACDSFRVKVETIAWCRRRKLPLLTVGAAGGRTDPTLV
RVRDVSRTEHDAMLALIRKKLRGEFNFPKNPQRYFGVPAVYSLENVKYPQADGSVCGIRPQLDADATLKLDCGAGLGAAT
HITGTFAFVAVGKALEMLLKPKAAAARPAAEAVAAS
>Mature_276_residues
MKAQSRERFAGIDRLYGVGTVERLSACRVAVVGMGGVGSWVVEALARTGVGQIRLIDADDLCVSNTNRQLPALAGQYGRN
KARAMAERCVAINPDIEADAVEAFLTSGNIETLLGAGFDLVIDACDSFRVKVETIAWCRRRKLPLLTVGAAGGRTDPTLV
RVRDVSRTEHDAMLALIRKKLRGEFNFPKNPQRYFGVPAVYSLENVKYPQADGSVCGIRPQLDADATLKLDCGAGLGAAT
HITGTFAFVAVGKALEMLLKPKAAAARPAAEAVAAS

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=262, Percent_Identity=46.5648854961832, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1787048, Length=130, Percent_Identity=35.3846153846154, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082356, Length=131, Percent_Identity=32.0610687022901, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321790, Length=180, Percent_Identity=27.2222222222222, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322825, Length=192, Percent_Identity=33.8541666666667, Blast_Score=72, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24660640, Length=187, Percent_Identity=28.3422459893048, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 29387; Mature: 29387

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAQSRERFAGIDRLYGVGTVERLSACRVAVVGMGGVGSWVVEALARTGVGQIRLIDADD
CCCCCHHHHHHHHHHHCCCHHHHHHHCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
LCVSNTNRQLPALAGQYGRNKARAMAERCVAINPDIEADAVEAFLTSGNIETLLGAGFDL
CEECCCCCCCCHHHHHHCCHHHHHHHHHHEEECCCCCHHHHHHHHHCCCHHHHHHCCHHH
VIDACDSFRVKVETIAWCRRRKLPLLTVGAAGGRTDPTLVRVRDVSRTEHDAMLALIRKK
EEECCCCCEEEHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
LRGEFNFPKNPQRYFGVPAVYSLENVKYPQADGSVCGIRPQLDADATLKLDCGAGLGAAT
HCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCCHH
HITGTFAFVAVGKALEMLLKPKAAAARPAAEAVAAS
HHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCC
>Mature Secondary Structure
MKAQSRERFAGIDRLYGVGTVERLSACRVAVVGMGGVGSWVVEALARTGVGQIRLIDADD
CCCCCHHHHHHHHHHHCCCHHHHHHHCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
LCVSNTNRQLPALAGQYGRNKARAMAERCVAINPDIEADAVEAFLTSGNIETLLGAGFDL
CEECCCCCCCCHHHHHHCCHHHHHHHHHHEEECCCCCHHHHHHHHHCCCHHHHHHCCHHH
VIDACDSFRVKVETIAWCRRRKLPLLTVGAAGGRTDPTLVRVRDVSRTEHDAMLALIRKK
EEECCCCCEEEHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
LRGEFNFPKNPQRYFGVPAVYSLENVKYPQADGSVCGIRPQLDADATLKLDCGAGLGAAT
HCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCCHH
HITGTFAFVAVGKALEMLLKPKAAAARPAAEAVAAS
HHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]