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The map label for this gene is 84490147

Identifier: 84490147

GI number: 84490147

Start: 1529074

End: 1529358

Strand: Direct

Name: 84490147

Synonym: Msp_1359

Alternate gene names: NA

Gene position: 1529074-1529358 (Clockwise)

Preceding gene: 84490146

Following gene: 84490148

Centisome position: 86.52

GC content: 29.12

Gene sequence:

>285_bases
ATGTCAAAAAAGAATTCAAAATTAAAAAAAATAGGTACAATAAGTCATATAACAAGTACTAACAAACTAATTGTACCTTC
AAATAAAACACCTCGTATTGGTTCAGTAATAGTAAATAAACAACATAAACCAATAGGTAAGATCAATGATATATTTGGGC
CAACCAAACAACCATACATCTCTATAAAAACTAGTAAAAAATTTAAAAAGGCTAATACGGGAGAAGCTGTATATCTACAA
CCAAAAAATAAGAGAAGGAGGATGAAACAACGGCAGGCATACTAA

Upstream 100 bases:

>100_bases
AACTAAAAAATAATAATACTAATTTTATACAAAAAATTCAACAATTATCAAAATAACTAAATATAGATAATAGTATTTAT
TCCTAAAAATAATAGAGAAA

Downstream 100 bases:

>100_bases
AACGGAAAAAAAGATATGGACGACCTCATAAAACACTAAAAACTGACATTAAAACCAGAAAGCCAAAGAAAAAAGAAGAA
AAAACAGAAGAAACTCCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MSKKNSKLKKIGTISHITSTNKLIVPSNKTPRIGSVIVNKQHKPIGKINDIFGPTKQPYISIKTSKKFKKANTGEAVYLQ
PKNKRRRMKQRQAY

Sequences:

>Translated_94_residues
MSKKNSKLKKIGTISHITSTNKLIVPSNKTPRIGSVIVNKQHKPIGKINDIFGPTKQPYISIKTSKKFKKANTGEAVYLQ
PKNKRRRMKQRQAY
>Mature_93_residues
SKKNSKLKKIGTISHITSTNKLIVPSNKTPRIGSVIVNKQHKPIGKINDIFGPTKQPYISIKTSKKFKKANTGEAVYLQP
KNKRRRMKQRQAY

Specific function: Unknown

COG id: COG3277

COG function: function code J; RNA-binding protein involved in rRNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0782.1 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007504
- InterPro:   IPR020321
- InterPro:   IPR021154
- InterPro:   IPR009000
- ProDom:   PD064583 [H]

Pfam domain/function: PF04410 Gar1 [H]

EC number: NA

Molecular weight: Translated: 10705; Mature: 10574

Theoretical pI: Translated: 11.79; Mature: 11.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKNSKLKKIGTISHITSTNKLIVPSNKTPRIGSVIVNKQHKPIGKINDIFGPTKQPYI
CCCCCCCHHHHCCHHEECCCCEEEECCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEE
SIKTSKKFKKANTGEAVYLQPKNKRRRMKQRQAY
EEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCC
>Mature Secondary Structure 
SKKNSKLKKIGTISHITSTNKLIVPSNKTPRIGSVIVNKQHKPIGKINDIFGPTKQPYI
CCCCCCHHHHCCHHEECCCCEEEECCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEE
SIKTSKKFKKANTGEAVYLQPKNKRRRMKQRQAY
EEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]