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The map label for this gene is frhD

Identifier: 84490091

GI number: 84490091

Start: 1468446

End: 1468919

Strand: Direct

Name: frhD

Synonym: Msp_1303

Alternate gene names: 84490091

Gene position: 1468446-1468919 (Clockwise)

Preceding gene: 84490090

Following gene: 84490092

Centisome position: 83.08

GC content: 29.11

Gene sequence:

>474_bases
ATGTCATATAATCATGAAAATTTAATAGTAGGCTGTGGAAATATTCTCTTTGGAGACGATGGTTTTGGTCCAAAGGTTAT
TGAATATATGAAAGAAAATAATGTTGAAATACCTGGAGATACTTGTTTAATTGATGGTGGAACTAGTGCTCCTCATTATA
TTTTTACATTACCTCAAGACAAATGGAAAAATATTATAATCATAGACATTGCATTATTAAACAAAAAACCAGGCACTATT
GAAGTTTTAAATTTAAATCAGGTGAAAGAAGAAGATAGATACATGGATATACATGGTATATCGGCTACATACCCATTACA
TGATTTAGAAGATAGAATCAACATTCAAATTGTGGGATGTCAACCAGAAAATGTTCCACAAGATATGGATTTAGAGTTAA
CAGAAACATTAAATGCAAGTATCCCTGAAGCTGTTGAAATTACTATTAAATTACTTAATAAAATGTTAAAATGA

Upstream 100 bases:

>100_bases
ACCCATGTTTATCATGTGCTACACATATGATTGTTAAAGATGATGAAACTAAAGAAGTATTAAAGGATGATATGGTTCAA
TTATAATTTGAAGGTATATT

Downstream 100 bases:

>100_bases
TTATATACTACAAAGGGAGATAAAACAATAAAAAAAGGTGAGTATCTTGTTTGAAAAACTTAAGAATTTATTAAAAAGTG
AAAATGAAAAAAAGATTGAA

Product: hypothetical protein

Products: reduced coenzyme F420

Alternate protein names: Putative coenzyme F420 hydrogenase-processing subunit [H]

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSYNHENLIVGCGNILFGDDGFGPKVIEYMKENNVEIPGDTCLIDGGTSAPHYIFTLPQDKWKNIIIIDIALLNKKPGTI
EVLNLNQVKEEDRYMDIHGISATYPLHDLEDRINIQIVGCQPENVPQDMDLELTETLNASIPEAVEITIKLLNKMLK

Sequences:

>Translated_157_residues
MSYNHENLIVGCGNILFGDDGFGPKVIEYMKENNVEIPGDTCLIDGGTSAPHYIFTLPQDKWKNIIIIDIALLNKKPGTI
EVLNLNQVKEEDRYMDIHGISATYPLHDLEDRINIQIVGCQPENVPQDMDLELTETLNASIPEAVEITIKLLNKMLK
>Mature_156_residues
SYNHENLIVGCGNILFGDDGFGPKVIEYMKENNVEIPGDTCLIDGGTSAPHYIFTLPQDKWKNIIIIDIALLNKKPGTIE
VLNLNQVKEEDRYMDIHGISATYPLHDLEDRINIQIVGCQPENVPQDMDLELTETLNASIPEAVEITIKLLNKMLK

Specific function: Unknown

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004411
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 1.12.98.1

Molecular weight: Translated: 17634; Mature: 17503

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYNHENLIVGCGNILFGDDGFGPKVIEYMKENNVEIPGDTCLIDGGTSAPHYIFTLPQD
CCCCCCEEEEECCCEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCC
KWKNIIIIDIALLNKKPGTIEVLNLNQVKEEDRYMDIHGISATYPLHDLEDRINIQIVGC
CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCEECCCCCCCCCEEEEEEEC
QPENVPQDMDLELTETLNASIPEAVEITIKLLNKMLK
CCCCCCCCCCEEEEHHCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SYNHENLIVGCGNILFGDDGFGPKVIEYMKENNVEIPGDTCLIDGGTSAPHYIFTLPQD
CCCCCEEEEECCCEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCC
KWKNIIIIDIALLNKKPGTIEVLNLNQVKEEDRYMDIHGISATYPLHDLEDRINIQIVGC
CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCEECCCCCCCCCEEEEEEEC
QPENVPQDMDLELTETLNASIPEAVEITIKLLNKMLK
CCCCCCCCCCEEEEHHCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2; coenzyme F420

Specific reaction: H2 + coenzyme F420 = reduced coenzyme F420

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2207102; 9371463 [H]