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The map label for this gene is ribC

Identifier: 84490027

GI number: 84490027

Start: 1409096

End: 1409560

Strand: Direct

Name: ribC

Synonym: Msp_1239

Alternate gene names: 84490027

Gene position: 1409096-1409560 (Clockwise)

Preceding gene: 84490026

Following gene: 84490028

Centisome position: 79.73

GC content: 33.76

Gene sequence:

>465_bases
ATGTCAAAAAGAATAGGAATTTGTAGTACTACCTTTGCACGATTTGATATGGCAAGTGCAGCAATTAAACAAATAAAAAA
ACAAGTTACTGGTGTTAAATATATCGAACGTTATGTTCCTGGTGTTAAAGATTTACCAGTTGCTGCTAAAAAGTTAATTG
AAGAAGAAAACTGTGACATTGTTATGGCTTTTGGAATGCCTGGTGGCGAAAAGATCGATAAGTTATGTGCTCATGAAGCA
AGTACTGGTCTTATACAAGCACAACTAATGACTAATACCCATATACTTGAAGTATTTGTTCATGAAGATGAAGGAAAAGA
TGAAAAAGATCTTAAAGAATTAGCATATAACCGTGCAACCCAACATGCAGATAATCTTGTAAAAATGTTATTTAAGCCAG
AAGCTATGAAAAAAGAAGCTGGAACTGGTGTACGTGAAGGTCGAGAAAATAAAGGACCATTATAA

Upstream 100 bases:

>100_bases
TCCACACAGGATTTATAGATCTTAAACGTCTAAAAAAATCTTTTGAAGTTAAAGAAATAATTTATGAAAAATAATTTTTC
AATAGGAGTGTTGTTAAATA

Downstream 100 bases:

>100_bases
TCCTATTGCTTTTATAATTAATTAATGACCTCCTTACTTATTTTTTTTTCTAATACTCTGCTTGTTTAGATTATGAAACT
TATTTCACTATTTTTATGAG

Product: riboflavin synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSKRIGICSTTFARFDMASAAIKQIKKQVTGVKYIERYVPGVKDLPVAAKKLIEEENCDIVMAFGMPGGEKIDKLCAHEA
STGLIQAQLMTNTHILEVFVHEDEGKDEKDLKELAYNRATQHADNLVKMLFKPEAMKKEAGTGVREGRENKGPL

Sequences:

>Translated_154_residues
MSKRIGICSTTFARFDMASAAIKQIKKQVTGVKYIERYVPGVKDLPVAAKKLIEEENCDIVMAFGMPGGEKIDKLCAHEA
STGLIQAQLMTNTHILEVFVHEDEGKDEKDLKELAYNRATQHADNLVKMLFKPEAMKKEAGTGVREGRENKGPL
>Mature_153_residues
SKRIGICSTTFARFDMASAAIKQIKKQVTGVKYIERYVPGVKDLPVAAKKLIEEENCDIVMAFGMPGGEKIDKLCAHEAS
TGLIQAQLMTNTHILEVFVHEDEGKDEKDLKELAYNRATQHADNLVKMLFKPEAMKKEAGTGVREGRENKGPL

Specific function: Unknown

COG id: COG1731

COG function: function code H; Archaeal riboflavin synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DMRL synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002180
- InterPro:   IPR006399 [H]

Pfam domain/function: PF00885 DMRL_synthase [H]

EC number: =2.5.1.9 [H]

Molecular weight: Translated: 17094; Mature: 16963

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRIGICSTTFARFDMASAAIKQIKKQVTGVKYIERYVPGVKDLPVAAKKLIEEENCDI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCE
VMAFGMPGGEKIDKLCAHEASTGLIQAQLMTNTHILEVFVHEDEGKDEKDLKELAYNRAT
EEEECCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
QHADNLVKMLFKPEAMKKEAGTGVREGRENKGPL
HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKRIGICSTTFARFDMASAAIKQIKKQVTGVKYIERYVPGVKDLPVAAKKLIEEENCDI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCE
VMAFGMPGGEKIDKLCAHEASTGLIQAQLMTNTHILEVFVHEDEGKDEKDLKELAYNRAT
EEEECCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
QHADNLVKMLFKPEAMKKEAGTGVREGRENKGPL
HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]