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The map label for this gene is rnhB [H]

Identifier: 83721502

GI number: 83721502

Start: 2312993

End: 2313637

Strand: Direct

Name: rnhB [H]

Synonym: BTH_I2041

Alternate gene names: 83721502

Gene position: 2312993-2313637 (Clockwise)

Preceding gene: 83719655

Following gene: 83720773

Centisome position: 60.72

GC content: 69.77

Gene sequence:

>645_bases
ATGGCGACGGCTCGCAAACCCCGCGGCGGCGCCGGTGGCGCGGCCCAGCCCGCGCTCGATTTCGACGCGCCGGGCGAGAT
CGTCTGCGGCGTCGACGAAGCCGGGCGCGGCCCGCTTGCCGGGCCTGTCGTCGCGGCGGCCGTCGTGCTCGATCCGGCGC
GGCCGATCGTGGGCCTCGACGATTCGAAGGCGCTGTCCGCGAAGAAGCGCGAGCGGCTCTTCGACGAAATCGTCGCGCAT
GCGCTCGCATACTGCGTCGCATCGGCAAGCGTCGAGGAAATCGACACTCTCAACATCCTGCACGCGACGATGCTCGCGAT
GAAGCGCGCGGTCGAAGGGCTCGCGGTGCGGCCGACGCTCGCGAAGATCGACGGCAACCGCTGCCCGATGCTCGCGATCC
GCAGCGAAGCGATCGTCGGCGGCGACGCGCTCGTGCCGAGCATCTCGGCCGCGTCGATCCTCGCGAAGGTCACGCGCGAC
CGGATGCTCGTCGAGCTGCATCAGCAGTTTCCGATGTACGGATTCGATGCGCACGCGGGCTACGGCACGCCGCAGCACCT
CGCCGCCTTGCGCGAGCATGGGCCGTGCGAGCATCACCGGCGCTCGTTCGCACCGGTGCGCGAAGCCTTCGATCTGATTC
GATGA

Upstream 100 bases:

>100_bases
CTGGTATTTTCACCGACATGCATCTCGCGTTGCGCCAGAACACCGCGCAGCGCGCGGCCGAGGCCGTCGCGCGCGTGATC
GACAGCAGGAAGCCGCACTG

Downstream 100 bases:

>100_bases
AAGCGATCACTTCCCGCGACAATCCGCTGTACAAGCGCCTGAAGGCGCTCGCGGGATCGACCCATCAGCAGCGCCGCGGC
GGCCAGGCGCTCCTCGAGGG

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MATARKPRGGAGGAAQPALDFDAPGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAH
ALAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPMLAIRSEAIVGGDALVPSISAASILAKVTRD
RMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPVREAFDLIR

Sequences:

>Translated_214_residues
MATARKPRGGAGGAAQPALDFDAPGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAH
ALAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPMLAIRSEAIVGGDALVPSISAASILAKVTRD
RMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPVREAFDLIR
>Mature_213_residues
ATARKPRGGAGGAAQPALDFDAPGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHA
LAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPMLAIRSEAIVGGDALVPSISAASILAKVTRDR
MLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPVREAFDLIR

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=195, Percent_Identity=58.4615384615385, Blast_Score=217, Evalue=6e-58,
Organism=Caenorhabditis elegans, GI17536263, Length=186, Percent_Identity=34.9462365591398, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22626; Mature: 22495

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATARKPRGGAGGAAQPALDFDAPGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLD
CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
DSKALSAKKRERLFDEIVAHALAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVRPTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
AKIDGNRCPMLAIRSEAIVGGDALVPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAG
HHCCCCCCCEEEECCCHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YGTPQHLAALREHGPCEHHRRSFAPVREAFDLIR
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATARKPRGGAGGAAQPALDFDAPGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLD
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
DSKALSAKKRERLFDEIVAHALAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVRPTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
AKIDGNRCPMLAIRSEAIVGGDALVPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAG
HHCCCCCCCEEEECCCHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YGTPQHLAALREHGPCEHHRRSFAPVREAFDLIR
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA